Wall clock time and date at job start Sun Mar 29 2020 22:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00148 * 2 1 4 4 C 1.52995 * 109.47393 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47281 * 184.99617 * 4 3 2 6 6 N 1.46502 * 109.47333 * 64.99616 * 4 3 2 7 7 C 1.34771 * 120.00084 * 155.00545 * 6 4 3 8 8 O 1.21692 * 120.00234 * 359.97438 * 7 6 4 9 9 C 1.46372 * 120.00242 * 180.02562 * 7 6 4 10 10 H 1.08004 * 119.99821 * 353.93011 * 9 7 6 11 11 C 1.40043 * 120.00324 * 173.93232 * 9 7 6 12 12 N 1.30675 * 120.00012 * 6.14890 * 11 9 7 13 13 Si 1.86801 * 120.00266 * 186.14464 * 11 9 7 14 14 H 1.48495 * 109.47129 * 94.98171 * 13 11 9 15 15 H 1.48504 * 109.47464 * 214.98410 * 13 11 9 16 16 H 1.48505 * 109.46805 * 334.98408 * 13 11 9 17 17 C 1.53006 * 109.46797 * 304.99700 * 4 3 2 18 18 C 1.53000 * 117.49873 * 248.74480 * 17 4 3 19 19 C 1.52997 * 117.49667 * 180.08583 * 17 4 3 20 20 H 1.09001 * 109.47327 * 299.99966 * 1 2 3 21 21 H 1.08998 * 109.47161 * 60.00485 * 1 2 3 22 22 H 1.09006 * 109.47401 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47111 * 59.99191 * 3 2 1 24 24 H 1.09001 * 109.46387 * 299.99523 * 3 2 1 25 25 H 0.97004 * 119.99647 * 334.99520 * 6 4 3 26 26 H 0.96999 * 119.99562 * 180.02562 * 12 11 9 27 27 H 1.08994 * 115.55003 * 34.41921 * 17 4 3 28 28 H 1.09004 * 117.49862 * 0.02562 * 18 17 4 29 29 H 1.09002 * 117.49686 * 145.02014 * 18 17 4 30 30 H 1.09001 * 117.50127 * 214.97793 * 19 17 4 31 31 H 1.09001 * 117.50062 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1764 0.0888 6 7 3.9757 0.5644 -1.2527 7 6 5.2195 0.7944 -1.7178 8 8 5.9768 1.5178 -1.0980 9 6 5.6592 0.1751 -2.9690 10 1 5.0249 -0.5422 -3.4686 11 6 6.9024 0.5126 -3.5184 12 7 7.7209 1.2866 -2.8562 13 14 7.3907 -0.1438 -5.1977 14 1 7.0555 0.8610 -6.2385 15 1 8.8515 -0.4105 -5.2194 16 1 6.6534 -1.4037 -5.4703 17 6 3.9789 0.3194 1.1808 18 6 4.7356 1.0098 2.3173 19 6 5.4797 0.0793 1.3563 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6885 1.8464 0.8899 24 1 1.6886 1.8462 -0.8901 25 1 3.3719 -0.0121 -1.7469 26 1 8.5819 1.5206 -3.2369 27 1 3.3045 -0.4945 1.4466 28 1 4.9170 2.0806 2.2236 29 1 4.5592 0.6498 3.3309 30 1 5.7927 -0.8925 1.7382 31 1 6.1511 0.5373 0.6300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379387636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:33 Heat of formation + Delta-G solvation = -87.632413 kcal Electronic energy + Delta-G solvation = -14546.330095 eV Core-core repulsion = 12020.665387 eV Total energy + Delta-G solvation = -2525.664709 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26320 -38.51430 -37.44178 -34.80705 -34.21429 -30.66504 -28.17784 -26.96259 -24.34756 -23.12285 -22.21578 -20.80713 -19.16357 -17.57626 -17.26822 -16.88696 -16.63955 -16.14547 -15.68316 -15.30504 -14.86779 -14.25844 -13.77774 -13.35004 -13.10843 -12.80504 -12.65802 -12.55589 -12.45778 -12.18986 -12.03230 -11.97522 -11.12418 -10.91083 -10.89124 -10.55249 -9.72755 -9.27761 -8.25411 -6.79336 1.40295 1.41054 1.56525 2.26040 2.49876 2.76886 3.00643 3.40550 3.62556 3.80441 4.10333 4.27879 4.29242 4.40791 4.57059 4.60698 4.65727 4.70149 4.81045 4.90532 5.01018 5.11796 5.35436 5.37535 5.59726 5.96881 6.25342 6.29410 6.42025 6.91938 7.64240 8.56234 8.74007 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.008929 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.490688 B = 3135.062350 C = 3723.888875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.072 3.928 4 C 0.180 3.820 5 H 0.060 0.940 6 N -0.745 5.745 7 C 0.547 3.453 8 O -0.617 6.617 9 C -0.577 4.577 10 H 0.079 0.921 11 C 0.033 3.967 12 N -0.819 5.819 13 Si 0.992 3.008 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.252 1.252 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.208 4.208 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.392 0.608 26 H 0.273 0.727 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 -2.201 4.318 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.005 4.005 4 C 0.075 3.925 5 H 0.078 0.922 6 N -0.398 5.398 7 C 0.351 3.649 8 O -0.504 6.504 9 C -0.614 4.614 10 H 0.097 0.903 11 C -0.183 4.183 12 N -0.449 5.449 13 Si 0.812 3.188 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.175 1.175 17 C -0.169 4.169 18 C -0.195 4.195 19 C -0.245 4.245 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.114 0.886 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.225 0.775 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.383 -1.743 4.790 12.472 hybrid contribution 0.117 -0.184 -0.859 0.886 sum -11.266 -1.927 3.931 12.087 Atomic orbital electron populations 1.22926 0.79546 1.03731 1.00832 1.87888 1.21352 1.27701 1.95523 1.22652 0.91071 0.85217 1.01532 1.20331 0.92650 0.95363 0.84180 0.92184 1.45837 1.15603 1.53778 1.24540 1.18401 0.80153 0.80737 0.85650 1.90482 1.55019 1.43527 1.61328 1.21412 1.04262 1.27529 1.08181 0.90262 1.26857 0.95194 0.93475 1.02731 1.70178 1.07511 1.29093 1.38079 0.85088 0.77880 0.79481 0.76331 1.18797 1.19770 1.17545 1.22613 0.94173 1.02517 0.97641 1.22954 1.03465 0.97984 0.95115 1.23142 0.96361 1.00883 1.04100 0.92777 0.93516 0.88594 0.90177 0.92545 0.77526 0.91729 0.86876 0.89844 0.86576 0.89658 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -11.48 9.46 -148.98 -1.41 -12.89 16 3 C 0.07 2.10 5.68 71.98 0.41 2.51 16 4 C 0.18 7.11 2.67 44.99 0.12 7.23 16 5 H 0.06 2.68 7.33 -2.39 -0.02 2.66 16 6 N -0.74 -34.58 5.04 -446.83 -2.25 -36.83 16 7 C 0.55 31.73 7.07 86.36 0.61 32.34 16 8 O -0.62 -40.12 12.07 -4.32 -0.05 -40.17 16 9 C -0.58 -33.39 9.53 24.83 0.24 -33.16 16 10 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 11 C 0.03 1.84 5.49 85.30 0.47 2.31 16 12 N -0.82 -50.37 11.85 21.83 0.26 -50.11 16 13 Si 0.99 41.86 29.56 68.60 2.03 43.89 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 17 C -0.15 -5.60 5.22 -10.79 -0.06 -5.66 16 18 C -0.16 -5.39 10.18 30.62 0.31 -5.07 16 19 C -0.21 -8.95 9.74 30.62 0.30 -8.65 16 20 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.39 16.72 8.36 -92.70 -0.78 15.94 16 26 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 27 H 0.11 3.92 7.39 -2.39 -0.02 3.90 16 28 H 0.08 2.93 8.05 -2.38 -0.02 2.91 16 29 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.08 4.58 5.02 -2.39 -0.01 4.57 16 Total: -1.00 -72.93 265.20 2.57 -70.36 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.35 Total: 32.19 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 3.65 Total: -6.42 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -1.99 Total: -86.95 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -1.46 Total: -53.06 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -72.93 2.57 -70.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379387636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.276 kcal (2) G-P(sol) polarization free energy of solvation -72.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds