Wall clock time and date at job start Sun Mar 29 2020 22:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47120 * 2 1 4 4 C 1.52998 * 109.46937 * 185.31805 * 3 2 1 5 5 C 1.53005 * 109.86820 * 173.54641 * 4 3 2 6 6 O 1.42899 * 109.47249 * 297.71168 * 5 4 3 7 7 C 1.54317 * 109.88345 * 294.56110 * 4 3 2 8 8 C 1.55161 * 102.93906 * 97.38505 * 7 4 3 9 9 C 1.54904 * 101.58297 * 35.49996 * 8 7 4 10 10 N 1.47283 * 109.98474 * 52.47988 * 4 3 2 11 11 C 1.36942 * 125.79801 * 59.42700 * 10 4 3 12 12 H 1.07998 * 119.99438 * 349.15074 * 11 10 4 13 13 C 1.38809 * 120.00074 * 169.14945 * 11 10 4 14 14 N 1.31611 * 120.00167 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99771 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47191 * 59.99858 * 15 13 11 17 17 H 1.48500 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46927 * 299.99832 * 15 13 11 19 19 H 1.08997 * 109.47260 * 299.99444 * 1 2 3 20 20 H 1.08994 * 109.47299 * 59.99559 * 1 2 3 21 21 H 1.09002 * 109.46895 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47185 * 240.00433 * 2 1 3 23 23 H 1.08994 * 109.47299 * 120.00441 * 2 1 3 24 24 H 1.09004 * 109.46666 * 65.32188 * 3 2 1 25 25 H 1.09001 * 109.46940 * 305.32182 * 3 2 1 26 26 H 1.08999 * 109.46906 * 57.71757 * 5 4 3 27 27 H 1.09004 * 109.46619 * 177.71108 * 5 4 3 28 28 H 0.96699 * 113.99626 * 180.02562 * 6 5 4 29 29 H 1.08991 * 110.72776 * 339.01975 * 7 4 3 30 30 H 1.09008 * 110.87490 * 215.81239 * 7 4 3 31 31 H 1.09006 * 111.00348 * 277.42145 * 8 7 4 32 32 H 1.09005 * 111.00284 * 153.57631 * 8 7 4 33 33 H 1.08997 * 110.36629 * 81.83143 * 9 8 7 34 34 H 1.09006 * 110.36678 * 204.04204 * 9 8 7 35 35 H 0.97005 * 120.00125 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5641 1.4446 -0.1337 5 6 4.0700 2.8794 -0.2960 6 8 3.5350 3.4402 -1.4966 7 6 4.2015 0.8016 1.1160 8 6 4.4655 -0.6577 0.6596 9 6 4.8426 -0.4545 -0.8291 10 7 3.9685 0.6365 -1.2968 11 6 3.5961 0.8597 -2.5956 12 1 2.8173 1.5739 -2.8189 13 6 4.2196 0.1681 -3.6250 14 7 5.1683 -0.7026 -3.3528 15 14 3.7110 0.4720 -5.3966 16 1 3.9337 1.9001 -5.7375 17 1 4.5220 -0.3849 -6.2984 18 1 2.2727 0.1420 -5.5623 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 1.7565 1.9281 0.9339 25 1 1.6009 1.9831 -0.8385 26 1 3.7499 3.4763 0.5580 27 1 5.1587 2.8769 -0.3498 28 1 3.8148 4.3505 -1.6641 29 1 3.5084 0.8232 1.9569 30 1 5.1359 1.2995 1.3753 31 1 3.5659 -1.2658 0.7553 32 1 5.2933 -1.0974 1.2159 33 1 5.8900 -0.1666 -0.9191 34 1 4.6500 -1.3649 -1.3969 35 1 5.6042 -1.1857 -4.0722 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379395642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:00 Heat of formation + Delta-G solvation = -34.575792 kcal Electronic energy + Delta-G solvation = -15724.769598 eV Core-core repulsion = 13337.238691 eV Total energy + Delta-G solvation = -2387.530907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.66168 -35.36138 -33.39931 -32.24087 -29.75330 -28.96609 -25.55418 -24.62459 -23.15226 -20.81433 -20.10905 -18.41962 -16.46401 -16.15481 -15.43447 -14.30020 -14.20987 -13.84996 -13.33195 -12.96508 -12.62011 -12.09227 -11.88563 -11.54496 -11.48698 -11.24147 -10.91379 -10.72432 -10.67811 -10.34890 -10.03609 -9.94197 -9.65099 -9.62799 -9.49455 -9.31100 -8.99448 -8.39060 -6.63074 -5.51764 -2.84520 3.52520 3.56273 3.58337 4.65134 5.00489 5.40501 5.47751 5.65984 5.75139 5.75829 5.82902 5.92328 5.98614 6.06558 6.17899 6.24053 6.30130 6.41287 6.47967 6.50041 6.64588 6.74119 6.74994 6.85601 7.08552 7.25020 7.32574 7.67385 7.82435 8.06752 8.39031 8.51832 9.44062 10.03097 10.69153 11.60075 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.012920 C = 0.012660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.980054 B = 2166.584699 C = 2211.183798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.110 4.110 4 C 0.184 3.816 5 C 0.078 3.922 6 O -0.544 6.544 7 C -0.119 4.119 8 C -0.151 4.151 9 C 0.168 3.832 10 N -0.578 5.578 11 C -0.185 4.185 12 H 0.083 0.917 13 C -0.020 4.020 14 N -0.932 5.932 15 Si 0.908 3.092 16 H -0.288 1.288 17 H -0.295 1.295 18 H -0.288 1.288 19 H 0.040 0.960 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.021 0.979 27 H 0.034 0.966 28 H 0.354 0.646 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.017 0.983 34 H 0.079 0.921 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.588 3.651 8.531 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.149 4.149 4 C 0.094 3.906 5 C -0.003 4.003 6 O -0.346 6.346 7 C -0.157 4.157 8 C -0.190 4.190 9 C 0.043 3.957 10 N -0.300 5.300 11 C -0.314 4.314 12 H 0.100 0.900 13 C -0.214 4.214 14 N -0.581 5.581 15 Si 0.739 3.261 16 H -0.215 1.215 17 H -0.221 1.221 18 H -0.215 1.215 19 H 0.059 0.941 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.104 0.896 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.198 0.802 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.805 2.952 8.248 9.551 hybrid contribution 0.201 0.869 -0.880 1.253 sum -3.604 3.821 7.369 9.049 Atomic orbital electron populations 1.21781 0.97700 1.00378 1.00655 1.21544 0.93568 0.97704 1.02770 1.21828 0.96931 0.96476 0.99667 1.20474 0.92876 0.88727 0.88530 1.22776 0.96414 0.95789 0.85282 1.86764 1.73864 1.30748 1.43242 1.22503 0.99536 0.97304 0.96376 1.23143 1.00361 0.95108 1.00355 1.21522 0.92749 0.93499 0.87909 1.44541 1.55722 1.28129 1.01643 1.19055 1.13678 1.18232 0.80417 0.89975 1.24796 0.98565 1.00532 0.97519 1.69913 1.28158 1.29944 1.30122 0.86246 0.77374 0.77225 0.85225 1.21499 1.22104 1.21542 0.94060 0.93170 0.93728 0.89640 0.93233 0.94368 0.91787 0.96129 0.94807 0.80192 0.92167 0.92326 0.91740 0.92737 0.96451 0.90278 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.12 -2.20 4.67 -26.73 -0.12 -2.32 16 3 C -0.11 -2.09 3.97 -26.73 -0.11 -2.20 16 4 C 0.18 3.76 0.67 -130.70 -0.09 3.67 16 5 C 0.08 1.49 6.01 37.16 0.22 1.71 16 6 O -0.54 -10.99 10.92 -35.23 -0.38 -11.37 16 7 C -0.12 -2.11 5.54 -24.90 -0.14 -2.25 16 8 C -0.15 -2.87 6.50 -24.58 -0.16 -3.03 16 9 C 0.17 4.09 5.48 -2.53 -0.01 4.07 16 10 N -0.58 -14.37 1.83 -155.19 -0.28 -14.65 16 11 C -0.19 -5.15 8.36 -15.06 -0.13 -5.27 16 12 H 0.08 2.33 6.88 -52.49 -0.36 1.97 16 13 C -0.02 -0.58 5.48 -17.44 -0.10 -0.67 16 14 N -0.93 -27.83 10.43 55.49 0.58 -27.25 16 15 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.09 1.91 7.00 -51.93 -0.36 1.55 16 23 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 24 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 25 H 0.06 1.36 7.45 -51.93 -0.39 0.97 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.67 8.11 -51.93 -0.42 0.25 16 28 H 0.35 5.34 9.12 45.56 0.42 5.75 16 29 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 30 H 0.06 0.98 7.84 -51.92 -0.41 0.58 16 31 H 0.06 1.19 6.03 -51.93 -0.31 0.88 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.02 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.08 2.16 6.64 -51.93 -0.35 1.81 16 35 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -30.78 268.63 -6.31 -37.08 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.98 Total: 2.35 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -0.26 Total: -8.26 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.29 Total: -41.90 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.38 Total: -11.37 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.78 -6.31 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379395642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.509 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds