Wall clock time and date at job start Sun Mar 29 2020 22:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47120 * 2 1 4 4 C 1.52998 * 109.46937 * 185.31805 * 3 2 1 5 5 C 1.53005 * 109.86820 * 173.54641 * 4 3 2 6 6 O 1.42899 * 109.47249 * 297.71168 * 5 4 3 7 7 C 1.54317 * 109.88345 * 294.56110 * 4 3 2 8 8 C 1.55161 * 102.93906 * 97.38505 * 7 4 3 9 9 C 1.54904 * 101.58297 * 35.49996 * 8 7 4 10 10 N 1.47283 * 109.98474 * 52.47988 * 4 3 2 11 11 C 1.36942 * 125.79801 * 59.42700 * 10 4 3 12 12 H 1.07998 * 119.99438 * 349.15074 * 11 10 4 13 13 C 1.38809 * 120.00074 * 169.14945 * 11 10 4 14 14 N 1.31611 * 120.00167 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99771 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47191 * 59.99858 * 15 13 11 17 17 H 1.48500 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46927 * 299.99832 * 15 13 11 19 19 H 1.08997 * 109.47260 * 299.99444 * 1 2 3 20 20 H 1.08994 * 109.47299 * 59.99559 * 1 2 3 21 21 H 1.09002 * 109.46895 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47185 * 240.00433 * 2 1 3 23 23 H 1.08994 * 109.47299 * 120.00441 * 2 1 3 24 24 H 1.09004 * 109.46666 * 65.32188 * 3 2 1 25 25 H 1.09001 * 109.46940 * 305.32182 * 3 2 1 26 26 H 1.08999 * 109.46906 * 57.71757 * 5 4 3 27 27 H 1.09004 * 109.46619 * 177.71108 * 5 4 3 28 28 H 0.96699 * 113.99626 * 180.02562 * 6 5 4 29 29 H 1.08991 * 110.72776 * 339.01975 * 7 4 3 30 30 H 1.09008 * 110.87490 * 215.81239 * 7 4 3 31 31 H 1.09006 * 111.00348 * 277.42145 * 8 7 4 32 32 H 1.09005 * 111.00284 * 153.57631 * 8 7 4 33 33 H 1.08997 * 110.36629 * 81.83143 * 9 8 7 34 34 H 1.09006 * 110.36678 * 204.04204 * 9 8 7 35 35 H 0.97005 * 120.00125 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5641 1.4446 -0.1337 5 6 4.0700 2.8794 -0.2960 6 8 3.5350 3.4402 -1.4966 7 6 4.2015 0.8016 1.1160 8 6 4.4655 -0.6577 0.6596 9 6 4.8426 -0.4545 -0.8291 10 7 3.9685 0.6365 -1.2968 11 6 3.5961 0.8597 -2.5956 12 1 2.8173 1.5739 -2.8189 13 6 4.2196 0.1681 -3.6250 14 7 5.1683 -0.7026 -3.3528 15 14 3.7110 0.4720 -5.3966 16 1 3.9337 1.9001 -5.7375 17 1 4.5220 -0.3849 -6.2984 18 1 2.2727 0.1420 -5.5623 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 1.7565 1.9281 0.9339 25 1 1.6009 1.9831 -0.8385 26 1 3.7499 3.4763 0.5580 27 1 5.1587 2.8769 -0.3498 28 1 3.8148 4.3505 -1.6641 29 1 3.5084 0.8232 1.9569 30 1 5.1359 1.2995 1.3753 31 1 3.5659 -1.2658 0.7553 32 1 5.2933 -1.0974 1.2159 33 1 5.8900 -0.1666 -0.9191 34 1 4.6500 -1.3649 -1.3969 35 1 5.6042 -1.1857 -4.0722 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379395642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:59 Heat of formation + Delta-G solvation = -55.308866 kcal Electronic energy + Delta-G solvation = -15725.668651 eV Core-core repulsion = 13337.238691 eV Total energy + Delta-G solvation = -2388.429960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30018 -36.93047 -35.09604 -34.06606 -31.38465 -30.85947 -26.97678 -26.55188 -24.89743 -22.33539 -21.79177 -20.17290 -18.22708 -17.87819 -17.09106 -16.23543 -15.70584 -15.68651 -14.95515 -14.58171 -14.03062 -13.78804 -13.55301 -13.23639 -13.03446 -12.97254 -12.72403 -12.55606 -12.29936 -12.02791 -11.82750 -11.67388 -11.37077 -11.27495 -11.08810 -10.94675 -10.60868 -10.48241 -8.66104 -7.68792 -5.00621 1.45651 1.48171 1.54116 2.58811 3.42676 3.57627 3.85308 3.97794 4.23807 4.29543 4.37630 4.44593 4.54263 4.59652 4.70242 4.82272 4.88725 4.93720 5.00289 5.08807 5.16110 5.25145 5.31647 5.35570 5.58855 5.72393 5.74277 5.75694 5.83601 5.90689 6.41083 7.13178 7.30396 7.98138 8.62142 9.41603 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.012920 C = 0.012660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.980054 B = 2166.584699 C = 2211.183798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.102 4.102 4 C 0.166 3.834 5 C 0.078 3.922 6 O -0.572 6.572 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.172 3.828 10 N -0.593 5.593 11 C -0.171 4.171 12 H 0.074 0.926 13 C -0.083 4.083 14 N -0.961 5.961 15 Si 0.962 3.038 16 H -0.285 1.285 17 H -0.300 1.300 18 H -0.284 1.284 19 H 0.066 0.934 20 H 0.037 0.963 21 H 0.053 0.947 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.020 0.980 28 H 0.376 0.624 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.078 0.922 33 H -0.016 1.016 34 H 0.039 0.961 35 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 4.717 10.812 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.141 4.141 4 C 0.077 3.923 5 C -0.002 4.002 6 O -0.378 6.378 7 C -0.147 4.147 8 C -0.175 4.175 9 C 0.046 3.954 10 N -0.315 5.315 11 C -0.301 4.301 12 H 0.092 0.908 13 C -0.273 4.273 14 N -0.613 5.613 15 Si 0.793 3.207 16 H -0.212 1.212 17 H -0.227 1.227 18 H -0.211 1.211 19 H 0.085 0.915 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.222 0.778 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.002 0.998 34 H 0.057 0.943 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.014 4.061 10.558 12.373 hybrid contribution 0.534 0.594 -1.535 1.730 sum -4.480 4.654 9.023 11.097 Atomic orbital electron populations 1.21726 0.95599 1.01327 1.01347 1.21442 0.95446 0.97033 1.01198 1.21744 0.95502 0.96655 1.00215 1.20916 0.94105 0.89229 0.88008 1.22728 0.95524 0.95563 0.86350 1.86694 1.74248 1.32698 1.44115 1.22523 1.00821 0.95425 0.95937 1.22985 1.01450 0.96781 0.96247 1.21277 0.91039 0.91730 0.91304 1.44700 1.55451 1.29349 1.02022 1.19150 1.12364 1.16507 0.82110 0.90828 1.25457 0.99605 1.01407 1.00837 1.70132 1.29681 1.31309 1.30195 0.85363 0.76980 0.76877 0.81472 1.21151 1.22671 1.21056 0.91458 0.94335 0.92748 0.94396 0.91568 0.90897 0.94503 0.92083 0.96196 0.77756 0.88557 0.91139 0.91086 0.90336 0.99798 0.94308 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.44 16 2 C -0.11 -3.98 4.67 30.60 0.14 -3.84 16 3 C -0.10 -3.62 3.97 30.60 0.12 -3.50 16 4 C 0.17 6.43 0.67 3.90 0.00 6.43 16 5 C 0.08 2.80 6.01 71.98 0.43 3.23 16 6 O -0.57 -22.35 10.92 -148.98 -1.63 -23.98 16 7 C -0.11 -3.45 5.54 31.78 0.18 -3.28 16 8 C -0.14 -4.90 6.50 31.99 0.21 -4.69 16 9 C 0.17 8.54 5.48 86.85 0.48 9.02 16 10 N -0.59 -29.72 1.83 -644.91 -1.18 -30.91 16 11 C -0.17 -9.73 8.36 84.03 0.70 -9.02 16 12 H 0.07 4.25 6.88 -2.91 -0.02 4.23 16 13 C -0.08 -4.89 5.48 84.86 0.46 -4.43 16 14 N -0.96 -59.91 10.43 21.65 0.23 -59.69 16 15 Si 0.96 48.78 29.55 68.60 2.03 50.81 16 16 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 18 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 19 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 20 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.04 1.69 7.00 -2.38 -0.02 1.67 16 23 H 0.07 2.08 5.99 -2.39 -0.01 2.06 16 24 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 25 H 0.04 1.50 7.45 -2.39 -0.02 1.48 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16 28 H 0.38 10.73 9.12 -74.06 -0.68 10.05 16 29 H 0.10 2.41 7.70 -2.39 -0.02 2.40 16 30 H 0.07 2.09 7.84 -2.38 -0.02 2.07 16 31 H 0.07 2.46 6.03 -2.38 -0.01 2.45 16 32 H 0.08 2.45 8.14 -2.38 -0.02 2.44 16 33 H -0.02 -0.88 8.13 -2.39 -0.02 -0.90 16 34 H 0.04 2.21 6.64 -2.38 -0.02 2.20 16 35 H 0.24 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -69.08 268.63 3.27 -65.81 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.38 Total: 11.47 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.44 Total: -13.52 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -0.96 Total: -90.59 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -1.63 Total: -23.98 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Total: -69.08 3.27 -65.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379395642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.503 kcal (2) G-P(sol) polarization free energy of solvation -69.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds