Wall clock time and date at job start Sun Mar 29 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52990 * 109.47016 * 2 1 4 4 C 1.53006 * 109.46944 * 175.29306 * 3 2 1 5 5 C 1.53005 * 109.87590 * 185.07813 * 4 3 2 6 6 O 1.42898 * 109.47130 * 61.65359 * 5 4 3 7 7 C 1.54317 * 109.88042 * 63.90437 * 4 3 2 8 8 C 1.55157 * 102.94352 * 218.39043 * 7 4 3 9 9 C 1.54912 * 101.58256 * 35.49930 * 8 7 4 10 10 N 1.47016 * 109.88276 * 306.09447 * 4 3 2 11 11 C 1.36939 * 125.64912 * 298.38893 * 10 4 3 12 12 H 1.07993 * 119.99921 * 350.51845 * 11 10 4 13 13 C 1.38818 * 119.99774 * 170.51365 * 11 10 4 14 14 N 1.31611 * 120.00312 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99439 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47507 * 60.00408 * 15 13 11 17 17 H 1.48499 * 109.46755 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47514 * 299.99901 * 15 13 11 19 19 H 1.08990 * 109.46787 * 299.99696 * 1 2 3 20 20 H 1.09000 * 109.46590 * 59.99437 * 1 2 3 21 21 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46742 * 120.00938 * 2 1 3 23 23 H 1.08999 * 109.46643 * 240.00473 * 2 1 3 24 24 H 1.08994 * 109.47866 * 295.29507 * 3 2 1 25 25 H 1.09000 * 109.47145 * 55.30051 * 3 2 1 26 26 H 1.08992 * 109.46913 * 181.65929 * 5 4 3 27 27 H 1.08998 * 109.46816 * 301.65688 * 5 4 3 28 28 H 0.96696 * 113.99938 * 180.02562 * 6 5 4 29 29 H 1.08998 * 110.72158 * 336.74848 * 7 4 3 30 30 H 1.08997 * 110.72302 * 100.02598 * 7 4 3 31 31 H 1.09002 * 111.00379 * 277.43074 * 8 7 4 32 32 H 1.08999 * 111.04170 * 153.58834 * 8 7 4 33 33 H 1.08998 * 110.37203 * 204.15367 * 9 8 7 34 34 H 1.08998 * 110.36769 * 81.82827 * 9 8 7 35 35 H 0.96999 * 119.99737 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5655 1.4440 0.1184 5 6 4.0758 2.8808 0.2464 6 8 3.5422 3.4719 1.4329 7 6 4.1888 0.7708 -1.1224 8 6 5.3798 -0.0242 -0.5250 9 6 4.8000 -0.4748 0.8390 10 7 3.9767 0.6609 1.2927 11 6 3.6487 0.9398 2.5927 12 1 3.1702 1.8758 2.8399 13 6 3.9314 0.0193 3.5926 14 7 4.5150 -1.1212 3.2913 15 14 3.4833 0.3995 5.3657 16 1 2.0166 0.6060 5.4724 17 1 3.8882 -0.7360 6.2329 18 1 4.1896 1.6309 5.8017 19 1 -0.3632 0.5137 0.8899 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5140 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.7472 1.9314 -0.9290 25 1 1.6096 1.9800 0.8449 26 1 5.1644 2.8762 0.3006 27 1 3.7577 3.4579 -0.6218 28 1 3.8241 4.3853 1.5783 29 1 3.4743 0.0973 -1.5956 30 1 4.5420 1.5199 -1.8311 31 1 6.2488 0.6190 -0.3868 32 1 5.6278 -0.8841 -1.1473 33 1 5.6048 -0.6673 1.5484 34 1 4.1828 -1.3644 0.7137 35 1 4.7121 -1.7645 3.9900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379395644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:03 Heat of formation + Delta-G solvation = -35.412613 kcal Electronic energy + Delta-G solvation = -15709.046249 eV Core-core repulsion = 13321.479055 eV Total energy + Delta-G solvation = -2387.567194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.62845 -35.35892 -33.47778 -32.32712 -29.62533 -28.96285 -25.48308 -24.61249 -23.20686 -20.83651 -20.11731 -18.35485 -16.68830 -16.14824 -14.78247 -14.67490 -14.27241 -13.90826 -13.37886 -12.88444 -12.58865 -12.13304 -11.88875 -11.71007 -11.47942 -11.11706 -10.76676 -10.72187 -10.67716 -10.34128 -10.05588 -9.92788 -9.79790 -9.61322 -9.42425 -9.31488 -8.93013 -8.39661 -6.63573 -5.50928 -2.84175 3.52495 3.56348 3.58189 4.65471 4.97190 5.44331 5.47794 5.61678 5.74822 5.79331 5.86191 5.98281 5.98476 6.04653 6.14606 6.24947 6.28102 6.37731 6.51997 6.63774 6.65687 6.69992 6.75725 6.89908 7.10210 7.27181 7.40114 7.68543 7.85720 8.12571 8.35948 8.51398 9.46010 10.04491 10.69812 11.60212 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024143 B = 0.013328 C = 0.012678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.474812 B = 2100.402141 C = 2208.091466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.110 4.110 4 C 0.185 3.815 5 C 0.078 3.922 6 O -0.546 6.546 7 C -0.122 4.122 8 C -0.151 4.151 9 C 0.166 3.834 10 N -0.577 5.577 11 C -0.194 4.194 12 H 0.092 0.908 13 C -0.021 4.021 14 N -0.931 5.931 15 Si 0.907 3.093 16 H -0.288 1.288 17 H -0.295 1.295 18 H -0.289 1.289 19 H 0.049 0.951 20 H 0.040 0.960 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.045 0.955 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.022 0.978 28 H 0.354 0.646 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.020 0.980 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 4.880 -8.338 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.150 4.150 4 C 0.095 3.905 5 C -0.002 4.002 6 O -0.349 6.349 7 C -0.160 4.160 8 C -0.189 4.189 9 C 0.041 3.959 10 N -0.300 5.300 11 C -0.323 4.323 12 H 0.110 0.890 13 C -0.215 4.215 14 N -0.581 5.581 15 Si 0.739 3.261 16 H -0.215 1.215 17 H -0.221 1.221 18 H -0.216 1.216 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.062 0.938 22 H 0.105 0.895 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.198 0.802 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.038 0.962 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.005 4.156 -8.044 9.273 hybrid contribution 0.058 0.742 0.837 1.120 sum -1.947 4.898 -7.207 8.929 Atomic orbital electron populations 1.21759 0.97627 1.00362 1.00612 1.21467 0.93680 0.97647 1.02701 1.21834 0.97038 0.96429 0.99669 1.20376 0.92669 0.89124 0.88376 1.22791 0.96471 0.95427 0.85481 1.86768 1.74024 1.29792 1.44273 1.22578 0.98172 0.98934 0.96324 1.23035 0.96951 0.98844 1.00093 1.21584 0.94776 0.89336 0.90172 1.44491 1.57330 1.27489 1.00674 1.19328 1.31408 1.00364 0.81161 0.88998 1.24809 1.02460 0.96382 0.97830 1.69909 1.48485 1.08739 1.30972 0.86245 0.78026 0.76594 0.85202 1.21515 1.22102 1.21567 0.93138 0.94093 0.93754 0.89505 0.93629 0.94569 0.91660 0.94719 0.95973 0.80181 0.91152 0.92656 0.92643 0.92555 0.90131 0.96169 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.12 -2.29 5.52 -26.73 -0.15 -2.44 16 3 C -0.11 -2.16 4.11 -26.73 -0.11 -2.27 16 4 C 0.18 3.77 0.55 -130.84 -0.07 3.70 16 5 C 0.08 1.47 5.98 37.16 0.22 1.69 16 6 O -0.55 -10.68 10.41 -35.23 -0.37 -11.05 16 7 C -0.12 -2.17 5.85 -24.90 -0.15 -2.31 16 8 C -0.15 -2.88 7.09 -24.58 -0.17 -3.05 16 9 C 0.17 4.04 5.53 -2.53 -0.01 4.02 16 10 N -0.58 -14.34 1.82 -155.37 -0.28 -14.63 16 11 C -0.19 -5.39 9.04 -15.06 -0.14 -5.53 16 12 H 0.09 2.59 6.02 -52.49 -0.32 2.27 16 13 C -0.02 -0.60 5.48 -17.43 -0.10 -0.69 16 14 N -0.93 -27.68 10.38 55.49 0.58 -27.10 16 15 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.09 2.08 7.21 -51.93 -0.37 1.70 16 23 H 0.05 0.83 6.44 -51.93 -0.33 0.50 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.42 7.60 -51.93 -0.39 1.03 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.35 5.07 9.12 45.56 0.42 5.49 16 29 H 0.07 1.20 6.07 -51.93 -0.31 0.89 16 30 H 0.05 0.85 7.83 -51.93 -0.41 0.44 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 2.21 6.55 -51.93 -0.34 1.87 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 270.97 15.07 4.08 4.08 Total: -1.00 -30.58 270.97 -6.32 -36.90 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.01 Total: 2.72 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.30 Total: -8.95 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.29 Total: -41.73 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.37 Total: -11.05 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.58 -6.32 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379395644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.488 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds