Wall clock time and date at job start Sun Mar 29 2020 22:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52990 * 109.47016 * 2 1 4 4 C 1.53006 * 109.46944 * 175.29306 * 3 2 1 5 5 C 1.53005 * 109.87590 * 185.07813 * 4 3 2 6 6 O 1.42898 * 109.47130 * 61.65359 * 5 4 3 7 7 C 1.54317 * 109.88042 * 63.90437 * 4 3 2 8 8 C 1.55157 * 102.94352 * 218.39043 * 7 4 3 9 9 C 1.54912 * 101.58256 * 35.49930 * 8 7 4 10 10 N 1.47016 * 109.88276 * 306.09447 * 4 3 2 11 11 C 1.36939 * 125.64912 * 298.38893 * 10 4 3 12 12 H 1.07993 * 119.99921 * 350.51845 * 11 10 4 13 13 C 1.38818 * 119.99774 * 170.51365 * 11 10 4 14 14 N 1.31611 * 120.00312 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99439 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47507 * 60.00408 * 15 13 11 17 17 H 1.48499 * 109.46755 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47514 * 299.99901 * 15 13 11 19 19 H 1.08990 * 109.46787 * 299.99696 * 1 2 3 20 20 H 1.09000 * 109.46590 * 59.99437 * 1 2 3 21 21 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46742 * 120.00938 * 2 1 3 23 23 H 1.08999 * 109.46643 * 240.00473 * 2 1 3 24 24 H 1.08994 * 109.47866 * 295.29507 * 3 2 1 25 25 H 1.09000 * 109.47145 * 55.30051 * 3 2 1 26 26 H 1.08992 * 109.46913 * 181.65929 * 5 4 3 27 27 H 1.08998 * 109.46816 * 301.65688 * 5 4 3 28 28 H 0.96696 * 113.99938 * 180.02562 * 6 5 4 29 29 H 1.08998 * 110.72158 * 336.74848 * 7 4 3 30 30 H 1.08997 * 110.72302 * 100.02598 * 7 4 3 31 31 H 1.09002 * 111.00379 * 277.43074 * 8 7 4 32 32 H 1.08999 * 111.04170 * 153.58834 * 8 7 4 33 33 H 1.08998 * 110.37203 * 204.15367 * 9 8 7 34 34 H 1.08998 * 110.36769 * 81.82827 * 9 8 7 35 35 H 0.96999 * 119.99737 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5655 1.4440 0.1184 5 6 4.0758 2.8808 0.2464 6 8 3.5422 3.4719 1.4329 7 6 4.1888 0.7708 -1.1224 8 6 5.3798 -0.0242 -0.5250 9 6 4.8000 -0.4748 0.8390 10 7 3.9767 0.6609 1.2927 11 6 3.6487 0.9398 2.5927 12 1 3.1702 1.8758 2.8399 13 6 3.9314 0.0193 3.5926 14 7 4.5150 -1.1212 3.2913 15 14 3.4833 0.3995 5.3657 16 1 2.0166 0.6060 5.4724 17 1 3.8882 -0.7360 6.2329 18 1 4.1896 1.6309 5.8017 19 1 -0.3632 0.5137 0.8899 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5140 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.7472 1.9314 -0.9290 25 1 1.6096 1.9800 0.8449 26 1 5.1644 2.8762 0.3006 27 1 3.7577 3.4579 -0.6218 28 1 3.8241 4.3853 1.5783 29 1 3.4743 0.0973 -1.5956 30 1 4.5420 1.5199 -1.8311 31 1 6.2488 0.6190 -0.3868 32 1 5.6278 -0.8841 -1.1473 33 1 5.6048 -0.6673 1.5484 34 1 4.1828 -1.3644 0.7137 35 1 4.7121 -1.7645 3.9900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379395644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:02 Heat of formation + Delta-G solvation = -55.796509 kcal Electronic energy + Delta-G solvation = -15709.930161 eV Core-core repulsion = 13321.479055 eV Total energy + Delta-G solvation = -2388.451106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26359 -36.88144 -35.15382 -34.21822 -31.26928 -30.83703 -26.95042 -26.50680 -24.94052 -22.35430 -21.87886 -20.09342 -18.37209 -17.89465 -16.60270 -16.33196 -15.84180 -15.73779 -15.09093 -14.46102 -14.04541 -13.79194 -13.55956 -13.39236 -13.03830 -12.94415 -12.71015 -12.53830 -12.19286 -11.97851 -11.92731 -11.64576 -11.44866 -11.33072 -11.09462 -10.93850 -10.52485 -10.48588 -8.65227 -7.67048 -4.99269 1.45917 1.48258 1.54153 2.59472 3.42674 3.63023 3.83280 3.99558 4.16754 4.31477 4.35592 4.45675 4.53129 4.61913 4.68857 4.79101 4.85828 4.91922 5.00114 5.11281 5.12940 5.23205 5.29254 5.37896 5.58462 5.69101 5.75362 5.79295 5.85892 5.94633 6.44286 7.14407 7.33439 8.00721 8.63865 9.42616 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024143 B = 0.013328 C = 0.012678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.474812 B = 2100.402141 C = 2208.091466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.103 4.103 4 C 0.166 3.834 5 C 0.080 3.920 6 O -0.575 6.575 7 C -0.112 4.112 8 C -0.137 4.137 9 C 0.170 3.830 10 N -0.592 5.592 11 C -0.183 4.183 12 H 0.087 0.913 13 C -0.083 4.083 14 N -0.959 5.959 15 Si 0.961 3.039 16 H -0.286 1.286 17 H -0.301 1.301 18 H -0.283 1.283 19 H 0.038 0.962 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.032 0.968 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.377 0.623 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.039 0.961 34 H -0.011 1.011 35 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 6.506 -10.586 12.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.142 4.142 4 C 0.078 3.922 5 C 0.001 3.999 6 O -0.380 6.380 7 C -0.149 4.149 8 C -0.175 4.175 9 C 0.044 3.956 10 N -0.314 5.314 11 C -0.313 4.313 12 H 0.105 0.895 13 C -0.273 4.273 14 N -0.612 5.612 15 Si 0.793 3.207 16 H -0.213 1.213 17 H -0.227 1.227 18 H -0.210 1.210 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.224 0.776 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.007 0.993 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.554 5.833 -10.321 12.127 hybrid contribution 0.201 0.295 1.482 1.525 sum -2.352 6.128 -8.838 11.009 Atomic orbital electron populations 1.21703 0.95427 1.01227 1.01442 1.21357 0.95663 0.97325 1.00658 1.21748 0.96208 0.96130 1.00152 1.20831 0.93521 0.90041 0.87823 1.22711 0.96005 0.94599 0.86611 1.86688 1.74457 1.31817 1.45079 1.22583 0.97230 0.99531 0.95588 1.22888 0.97552 1.00056 0.97038 1.21330 0.93154 0.88742 0.92331 1.44652 1.57648 1.27997 1.01144 1.19499 1.29320 0.99628 0.82853 0.89500 1.25478 1.03919 0.96799 1.01153 1.70134 1.50409 1.09543 1.31095 0.85372 0.77676 0.76155 0.81542 1.21294 1.22746 1.20952 0.94273 0.91201 0.92982 0.94948 0.92242 0.91052 0.94440 0.95302 0.92038 0.77596 0.90267 0.88812 0.92058 0.90160 0.94283 0.99289 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.91 71.99 0.71 -3.71 16 2 C -0.11 -4.26 5.52 30.59 0.17 -4.09 16 3 C -0.10 -3.81 4.11 30.59 0.13 -3.68 16 4 C 0.17 6.43 0.55 3.96 0.00 6.43 16 5 C 0.08 2.74 5.98 71.98 0.43 3.17 16 6 O -0.57 -21.39 10.41 -148.98 -1.55 -22.94 16 7 C -0.11 -3.53 5.85 31.78 0.19 -3.35 16 8 C -0.14 -4.96 7.09 31.99 0.23 -4.73 16 9 C 0.17 8.43 5.53 86.86 0.48 8.91 16 10 N -0.59 -29.63 1.82 -645.47 -1.17 -30.80 16 11 C -0.18 -10.38 9.04 84.03 0.76 -9.62 16 12 H 0.09 4.95 6.02 -2.91 -0.02 4.94 16 13 C -0.08 -4.90 5.48 84.86 0.46 -4.44 16 14 N -0.96 -59.71 10.38 21.65 0.22 -59.48 16 15 Si 0.96 48.75 29.55 68.60 2.03 50.78 16 16 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 17 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 18 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 19 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 20 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.03 1.57 7.21 -2.39 -0.02 1.56 16 23 H 0.06 2.05 6.44 -2.39 -0.02 2.04 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.04 1.58 7.60 -2.39 -0.02 1.56 16 26 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.38 9.94 9.12 -74.06 -0.68 9.27 16 29 H 0.08 2.38 6.07 -2.39 -0.01 2.36 16 30 H 0.09 2.32 7.83 -2.39 -0.02 2.30 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.04 2.24 6.55 -2.39 -0.02 2.23 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -68.96 270.97 3.47 -65.50 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.38 Total: 12.05 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 3.56 Total: -15.10 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -0.95 Total: -90.28 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.55 Total: -22.94 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -68.96 3.47 -65.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379395644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.700 kcal (2) G-P(sol) polarization free energy of solvation -68.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds