Wall clock time and date at job start Sun Mar 29 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.46935 * 2 1 4 4 C 1.42903 * 114.00056 * 180.02562 * 3 2 1 5 5 H 1.09007 * 115.54916 * 4.28081 * 4 3 2 6 6 C 1.53000 * 117.50143 * 218.61318 * 4 3 2 7 7 C 1.53002 * 60.02940 * 252.49656 * 6 4 3 8 8 H 1.09000 * 117.49996 * 107.50493 * 7 6 4 9 9 C 1.50706 * 117.49668 * 252.51929 * 7 6 4 10 10 O 1.21277 * 120.00023 * 68.61167 * 9 7 6 11 11 N 1.34780 * 119.99945 * 248.60941 * 9 7 6 12 12 C 1.46496 * 119.99685 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.47226 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99345 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00538 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00441 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99784 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46943 * 89.99636 * 17 15 13 19 19 H 1.48494 * 109.47477 * 209.99656 * 17 15 13 20 20 H 1.48496 * 109.47272 * 330.00062 * 17 15 13 21 21 H 1.09002 * 109.47104 * 59.99710 * 1 2 3 22 22 H 1.09004 * 109.47242 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47192 * 299.99852 * 1 2 3 24 24 H 1.09008 * 109.47123 * 240.00675 * 2 1 3 25 25 H 1.08996 * 109.47439 * 120.00031 * 2 1 3 26 26 H 1.09002 * 117.49833 * 359.97438 * 6 4 3 27 27 H 1.09002 * 117.49953 * 144.99802 * 6 4 3 28 28 H 0.96998 * 119.99800 * 0.02562 * 11 9 7 29 29 H 1.09005 * 109.47246 * 299.99790 * 12 11 9 30 30 H 1.09002 * 109.47282 * 60.00254 * 12 11 9 31 31 H 0.96998 * 120.00431 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5196 -0.0744 6 6 4.0517 2.5729 0.8462 7 6 4.0426 2.6881 -0.6794 8 1 3.3585 3.4100 -1.1256 9 6 5.3540 2.5043 -1.3989 10 8 5.8840 1.4138 -1.4244 11 7 5.9377 3.5519 -2.0140 12 6 7.2122 3.3731 -2.7139 13 6 7.6466 4.6872 -3.3103 14 1 7.0342 5.5674 -3.1812 15 6 8.8256 4.7658 -4.0206 16 7 9.2044 5.9124 -4.5414 17 14 9.8844 3.2431 -4.2444 18 1 9.4749 2.5332 -5.4828 19 1 11.3104 3.6432 -4.3517 20 1 9.7094 2.3425 -3.0768 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 3.3735 3.2192 1.4035 27 1 5.0062 2.3646 1.3295 28 1 5.5140 4.4242 -1.9933 29 1 7.9683 3.0268 -2.0092 30 1 7.0906 2.6360 -3.5077 31 1 10.0341 5.9678 -5.0408 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379400204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:15 Heat of formation + Delta-G solvation = -64.539547 kcal Electronic energy + Delta-G solvation = -13677.086080 eV Core-core repulsion = 11152.422753 eV Total energy + Delta-G solvation = -2524.663327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.57105 -37.97811 -35.09375 -34.23033 -32.34332 -30.94587 -28.18437 -24.17429 -23.03532 -22.13362 -21.48562 -19.69203 -17.74084 -16.82009 -15.97279 -15.66575 -15.38584 -14.74620 -14.42762 -14.08128 -13.31050 -12.86304 -12.81683 -12.50636 -12.37537 -12.10496 -12.05650 -11.32499 -11.13986 -10.97073 -10.78941 -10.44945 -9.97999 -9.52452 -9.41511 -9.08293 -8.78760 -8.17366 -6.21897 -4.24352 2.94252 3.24294 3.26400 3.33301 3.41003 3.92010 4.17344 4.32956 4.81112 4.86523 4.94318 5.00353 5.13318 5.16806 5.27314 5.35739 5.50805 5.65916 5.71018 5.76697 5.92425 6.03178 6.79024 7.05298 7.13209 7.20630 7.37702 8.12428 8.50653 8.74196 8.90793 9.37956 10.90076 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064921 B = 0.005298 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.189010 B = 5283.524677 C = 5427.177831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.048 3.952 5 H 0.124 0.876 6 C -0.157 4.157 7 C -0.188 4.188 8 H 0.127 0.873 9 C 0.530 3.470 10 O -0.562 6.562 11 N -0.698 5.698 12 C 0.219 3.781 13 C -0.544 4.544 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.892 5.892 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.399 0.601 29 H 0.026 0.974 30 H 0.021 0.979 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 -8.725 9.445 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.277 6.277 4 C -0.010 4.010 5 H 0.141 0.859 6 C -0.194 4.194 7 C -0.210 4.210 8 H 0.145 0.855 9 C 0.315 3.685 10 O -0.443 6.443 11 N -0.345 5.345 12 C 0.097 3.903 13 C -0.582 4.582 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.529 5.529 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.232 0.768 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.120 -9.229 9.283 18.533 hybrid contribution 0.576 -0.291 -0.325 0.723 sum -12.544 -9.520 8.957 18.116 Atomic orbital electron populations 1.21752 0.93679 1.02274 1.03132 1.22549 0.95378 0.83475 1.00554 1.87793 1.18923 1.26893 1.94064 1.22617 0.81526 0.94572 1.02330 0.85874 1.23409 1.02829 1.01865 0.91332 1.22743 0.98075 1.03732 0.96408 0.85538 1.19511 0.85011 0.84742 0.79208 1.90631 1.65589 1.25757 1.62278 1.46114 1.24581 1.11175 1.52666 1.19525 0.80782 0.98028 0.91927 1.21096 1.07863 0.94452 1.34800 0.90184 1.24793 0.97111 0.96253 0.94455 1.69876 1.23381 1.24712 1.34962 0.86810 0.79763 0.83388 0.79688 1.19829 1.20859 1.18540 0.91778 0.91024 0.91881 0.92906 0.93070 0.87402 0.87555 0.76758 0.95641 0.96091 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.58 6.53 37.16 0.24 0.82 16 3 O -0.36 -4.71 10.60 -35.23 -0.37 -5.09 16 4 C 0.05 0.67 5.96 -26.70 -0.16 0.51 16 5 H 0.12 1.76 7.46 -51.93 -0.39 1.37 16 6 C -0.16 -1.99 10.18 -26.73 -0.27 -2.26 16 7 C -0.19 -2.83 6.14 -91.73 -0.56 -3.40 16 8 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 9 C 0.53 10.43 7.61 -10.98 -0.08 10.35 16 10 O -0.56 -12.91 16.26 5.56 0.09 -12.82 16 11 N -0.70 -14.55 5.55 -61.47 -0.34 -14.89 16 12 C 0.22 5.48 4.50 -5.19 -0.02 5.46 16 13 C -0.54 -15.08 9.83 -34.44 -0.34 -15.42 16 14 H 0.08 2.30 7.84 -52.48 -0.41 1.89 16 15 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 17 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.26 -6.36 6.54 56.52 0.37 -6.00 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.40 7.36 8.32 -40.82 -0.34 7.02 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 30 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -31.96 272.91 -5.77 -37.74 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.45 Total: 2.61 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.91 Total: -2.67 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.43 Total: -40.73 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.28 Total: -17.91 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.96 -5.77 -37.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.804 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds