Wall clock time and date at job start Sun Mar 29 2020 22:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.46935 * 2 1 4 4 C 1.42903 * 114.00056 * 180.02562 * 3 2 1 5 5 H 1.09007 * 115.54916 * 4.28081 * 4 3 2 6 6 C 1.53000 * 117.50143 * 218.61318 * 4 3 2 7 7 C 1.53002 * 60.02940 * 252.49656 * 6 4 3 8 8 H 1.09000 * 117.49996 * 107.50493 * 7 6 4 9 9 C 1.50706 * 117.49668 * 252.51929 * 7 6 4 10 10 O 1.21277 * 120.00023 * 68.61167 * 9 7 6 11 11 N 1.34780 * 119.99945 * 248.60941 * 9 7 6 12 12 C 1.46496 * 119.99685 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.47226 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99345 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00538 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00441 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99784 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46943 * 89.99636 * 17 15 13 19 19 H 1.48494 * 109.47477 * 209.99656 * 17 15 13 20 20 H 1.48496 * 109.47272 * 330.00062 * 17 15 13 21 21 H 1.09002 * 109.47104 * 59.99710 * 1 2 3 22 22 H 1.09004 * 109.47242 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47192 * 299.99852 * 1 2 3 24 24 H 1.09008 * 109.47123 * 240.00675 * 2 1 3 25 25 H 1.08996 * 109.47439 * 120.00031 * 2 1 3 26 26 H 1.09002 * 117.49833 * 359.97438 * 6 4 3 27 27 H 1.09002 * 117.49953 * 144.99802 * 6 4 3 28 28 H 0.96998 * 119.99800 * 0.02562 * 11 9 7 29 29 H 1.09005 * 109.47246 * 299.99790 * 12 11 9 30 30 H 1.09002 * 109.47282 * 60.00254 * 12 11 9 31 31 H 0.96998 * 120.00431 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5196 -0.0744 6 6 4.0517 2.5729 0.8462 7 6 4.0426 2.6881 -0.6794 8 1 3.3585 3.4100 -1.1256 9 6 5.3540 2.5043 -1.3989 10 8 5.8840 1.4138 -1.4244 11 7 5.9377 3.5519 -2.0140 12 6 7.2122 3.3731 -2.7139 13 6 7.6466 4.6872 -3.3103 14 1 7.0342 5.5674 -3.1812 15 6 8.8256 4.7658 -4.0206 16 7 9.2044 5.9124 -4.5414 17 14 9.8844 3.2431 -4.2444 18 1 9.4749 2.5332 -5.4828 19 1 11.3104 3.6432 -4.3517 20 1 9.7094 2.3425 -3.0768 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 3.3735 3.2192 1.4035 27 1 5.0062 2.3646 1.3295 28 1 5.5140 4.4242 -1.9933 29 1 7.9683 3.0268 -2.0092 30 1 7.0906 2.6360 -3.5077 31 1 10.0341 5.9678 -5.0408 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379400204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:14 Heat of formation + Delta-G solvation = -87.845537 kcal Electronic energy + Delta-G solvation = -13678.096703 eV Core-core repulsion = 11152.422753 eV Total energy + Delta-G solvation = -2525.673951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00150 -39.15826 -36.40892 -35.89300 -34.41942 -31.72626 -30.15804 -25.76709 -23.79037 -23.46242 -23.02220 -21.29590 -19.27485 -18.38302 -17.50293 -16.93653 -16.49183 -16.32839 -16.17801 -15.53178 -14.90921 -14.45643 -14.24854 -13.72616 -13.55428 -13.34519 -13.11093 -13.02009 -12.72039 -12.16099 -11.94705 -11.88911 -11.68340 -11.59574 -10.94371 -10.93263 -10.20326 -9.98828 -8.41297 -6.49026 1.32206 1.34268 1.46346 1.49405 2.08842 2.27232 2.68358 2.87215 2.94239 3.68493 3.81532 4.03738 4.09458 4.19019 4.34817 4.46471 4.52026 4.72672 4.79819 4.91445 4.99155 5.01283 5.03705 5.23465 5.28268 5.46564 6.06108 6.18722 6.51592 6.78296 7.12639 7.33058 8.73530 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064921 B = 0.005298 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.189010 B = 5283.524677 C = 5427.177831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.368 6.368 4 C 0.051 3.949 5 H 0.116 0.884 6 C -0.135 4.135 7 C -0.199 4.199 8 H 0.144 0.856 9 C 0.531 3.469 10 O -0.597 6.597 11 N -0.699 5.699 12 C 0.231 3.769 13 C -0.550 4.550 14 H 0.059 0.941 15 C 0.026 3.974 16 N -0.931 5.931 17 Si 0.939 3.061 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.260 1.260 21 H 0.057 0.943 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.410 0.590 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.444 -9.756 10.404 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.287 6.287 4 C -0.008 4.008 5 H 0.133 0.867 6 C -0.172 4.172 7 C -0.220 4.220 8 H 0.161 0.839 9 C 0.319 3.681 10 O -0.480 6.480 11 N -0.348 5.348 12 C 0.107 3.893 13 C -0.587 4.587 14 H 0.077 0.923 15 C -0.174 4.174 16 N -0.569 5.569 17 Si 0.763 3.237 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.184 1.184 21 H 0.076 0.924 22 H 0.111 0.889 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.125 0.875 28 H 0.245 0.755 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.047 -10.248 10.254 20.186 hybrid contribution 0.776 0.041 -0.601 0.982 sum -13.271 -10.207 9.653 19.326 Atomic orbital electron populations 1.21767 0.92030 1.03668 1.02966 1.22816 0.96736 0.82297 1.01087 1.87784 1.18139 1.28709 1.94054 1.22566 0.82130 0.94044 1.02047 0.86653 1.23523 1.03142 1.01042 0.89509 1.22660 0.95876 1.05673 0.97826 0.83851 1.20220 0.86060 0.83568 0.78301 1.90607 1.66948 1.27004 1.63406 1.45988 1.23581 1.12385 1.52840 1.19146 0.82471 0.96106 0.91573 1.21288 1.07741 0.94919 1.34788 0.92324 1.25616 0.98496 0.99120 0.94174 1.69978 1.24262 1.26754 1.35951 0.85831 0.78453 0.79689 0.79762 1.18966 1.19651 1.18416 0.92372 0.88887 0.91583 0.93210 0.91765 0.84873 0.87451 0.75464 0.96670 0.96976 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.86 6.53 71.98 0.47 1.33 16 3 O -0.37 -8.92 10.60 -148.98 -1.58 -10.49 16 4 C 0.05 1.32 5.96 30.62 0.18 1.50 16 5 H 0.12 3.16 7.46 -2.38 -0.02 3.15 16 6 C -0.13 -3.07 10.18 30.60 0.31 -2.76 16 7 C -0.20 -5.65 6.14 -11.51 -0.07 -5.72 16 8 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 9 C 0.53 20.48 7.61 87.66 0.67 21.15 16 10 O -0.60 -27.22 16.26 -3.02 -0.05 -27.26 16 11 N -0.70 -28.91 5.55 -466.77 -2.59 -31.50 16 12 C 0.23 11.51 4.50 85.64 0.38 11.89 16 13 C -0.55 -30.74 9.83 25.60 0.25 -30.49 16 14 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 15 C 0.03 1.50 5.47 84.65 0.46 1.96 16 16 N -0.93 -55.90 13.96 21.44 0.30 -55.60 16 17 Si 0.94 44.19 27.47 68.60 1.88 46.08 16 18 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.09 0.89 8.14 -2.38 -0.02 0.88 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.41 14.98 8.32 -92.71 -0.77 14.21 16 29 H 0.02 0.80 7.20 -2.38 -0.02 0.78 16 30 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -67.63 272.91 1.66 -65.98 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.29 Total: 15.26 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 3.40 Total: -2.45 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.29 Total: -87.10 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.63 Total: -37.76 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -67.63 1.66 -65.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.870 kcal (2) G-P(sol) polarization free energy of solvation -67.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds