Wall clock time and date at job start Sun Mar 29 2020 22:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47119 * 2 1 4 4 C 1.42903 * 113.99988 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.55949 * 4.29183 * 4 3 2 6 6 C 1.53002 * 117.49524 * 218.60969 * 4 3 2 7 7 C 1.53000 * 60.02940 * 252.51742 * 6 4 3 8 8 H 1.08999 * 117.49942 * 252.47315 * 7 6 4 9 9 C 1.50706 * 117.49681 * 107.47810 * 7 6 4 10 10 O 1.21281 * 119.99986 * 291.39323 * 9 7 6 11 11 N 1.34774 * 120.00002 * 111.39157 * 9 7 6 12 12 C 1.46493 * 120.00172 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47413 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99944 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00330 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99816 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00233 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47145 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47285 * 120.00164 * 17 15 13 20 20 H 1.48498 * 109.47382 * 240.00328 * 17 15 13 21 21 H 1.09003 * 109.47065 * 300.00096 * 1 2 3 22 22 H 1.09006 * 109.47320 * 59.99641 * 1 2 3 23 23 H 1.08996 * 109.47274 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47269 * 240.00414 * 2 1 3 25 25 H 1.08992 * 109.47304 * 120.00114 * 2 1 3 26 26 H 1.09002 * 117.49918 * 145.01776 * 6 4 3 27 27 H 1.09002 * 117.49754 * 0.02562 * 6 4 3 28 28 H 0.96999 * 119.99862 * 359.97438 * 11 9 7 29 29 H 1.09003 * 109.46870 * 299.99952 * 12 11 9 30 30 H 1.08997 * 109.47820 * 59.99799 * 12 11 9 31 31 H 0.96999 * 120.00207 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5198 -0.0745 6 6 4.0517 2.5730 0.8462 7 6 4.0422 2.6883 -0.6794 8 1 4.9908 2.5565 -1.2000 9 6 3.0956 3.6858 -1.2959 10 8 1.8985 3.4989 -1.2426 11 7 3.5794 4.7856 -1.9065 12 6 2.6592 5.7556 -2.5054 13 6 3.4478 6.8842 -3.1181 14 1 4.5266 6.8796 -3.0663 15 6 2.7922 7.9226 -3.7449 16 7 1.4786 7.9284 -3.8077 17 14 3.7696 9.3218 -4.5038 18 1 5.2205 9.0803 -4.2989 19 1 3.4812 9.3951 -5.9587 20 1 3.3844 10.6022 -3.8577 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 5.0064 2.3648 1.3293 27 1 3.3735 3.2188 1.4041 28 1 4.5368 4.9353 -1.9488 29 1 2.0663 5.2651 -3.2774 30 1 1.9971 6.1516 -1.7355 31 1 1.0173 8.6587 -4.2490 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379400205.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:17 Heat of formation + Delta-G solvation = -87.082355 kcal Electronic energy + Delta-G solvation = -13928.673563 eV Core-core repulsion = 11403.032706 eV Total energy + Delta-G solvation = -2525.640857 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81456 -38.88355 -36.26099 -35.83301 -34.29416 -31.64622 -29.54442 -25.87980 -23.75269 -23.64283 -22.96645 -21.08071 -19.13956 -18.08421 -17.15113 -16.73905 -16.39580 -16.32672 -15.94938 -15.37169 -14.76123 -14.18618 -13.95016 -13.72717 -13.54950 -13.24187 -12.98964 -12.89338 -12.75590 -12.22570 -12.06773 -11.83586 -11.46930 -11.34295 -10.82106 -10.63240 -9.99161 -9.77453 -8.30214 -6.47538 1.42221 1.44153 1.57829 1.71327 2.31934 2.55536 2.71579 2.96288 3.04803 3.86904 3.89750 4.03525 4.21673 4.25126 4.45364 4.51666 4.52903 4.83381 4.89872 5.03279 5.04308 5.14641 5.22078 5.27217 5.50058 5.73125 5.84797 6.47468 6.64536 6.99129 7.22721 7.59335 8.82712 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054661 B = 0.005865 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.128166 B = 4773.148409 C = 5178.420423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.370 6.370 4 C 0.044 3.956 5 H 0.160 0.840 6 C -0.146 4.146 7 C -0.206 4.206 8 H 0.162 0.838 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.710 5.710 12 C 0.268 3.732 13 C -0.555 4.555 14 H 0.085 0.915 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.989 3.011 18 H -0.252 1.252 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.053 0.947 22 H 0.037 0.963 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.155 0.845 27 H 0.076 0.924 28 H 0.407 0.593 29 H -0.017 1.017 30 H -0.018 1.018 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -14.458 7.892 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.288 6.288 4 C -0.014 4.014 5 H 0.177 0.823 6 C -0.184 4.184 7 C -0.227 4.227 8 H 0.180 0.820 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.360 5.360 12 C 0.145 3.855 13 C -0.593 4.593 14 H 0.103 0.897 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.812 3.188 18 H -0.175 1.175 19 H -0.203 1.203 20 H -0.204 1.204 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.118 0.882 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.173 0.827 27 H 0.094 0.906 28 H 0.242 0.758 29 H 0.001 0.999 30 H 0.000 1.000 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.340 -14.325 7.858 17.912 hybrid contribution 0.146 0.954 -0.646 1.162 sum 7.485 -13.371 7.212 16.936 Atomic orbital electron populations 1.21754 0.94155 1.03149 1.01733 1.22747 0.95740 0.82990 1.01249 1.88192 1.19274 1.27614 1.93752 1.23015 0.82717 0.94220 1.01465 0.82323 1.23508 1.04058 1.01180 0.89610 1.22875 1.01615 0.99708 0.98474 0.82014 1.20570 0.88942 0.82207 0.78206 1.90683 1.18355 1.77047 1.60288 1.46183 1.11059 1.22239 1.56515 1.18493 0.89320 0.86805 0.90919 1.21662 0.94363 1.05975 1.37310 0.89728 1.26134 0.96012 1.01505 0.96138 1.70161 1.09465 1.33785 1.43829 0.85051 0.79021 0.77169 0.77588 1.17489 1.20336 1.20365 0.92816 0.94371 0.88190 0.92533 0.90826 0.82710 0.90570 0.75761 0.99900 1.00046 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 10.28 71.98 0.74 -2.86 16 2 C 0.05 1.15 6.53 71.98 0.47 1.62 16 3 O -0.37 -12.50 8.48 -127.83 -1.08 -13.58 16 4 C 0.04 1.12 6.41 30.62 0.20 1.32 16 5 H 0.16 2.43 7.93 -2.39 -0.02 2.41 16 6 C -0.15 -3.40 10.18 30.60 0.31 -3.09 16 7 C -0.21 -5.89 6.19 -11.51 -0.07 -5.96 16 8 H 0.16 3.29 8.14 -2.39 -0.02 3.27 16 9 C 0.51 22.63 7.61 87.66 0.67 23.29 16 10 O -0.58 -31.92 14.92 18.12 0.27 -31.65 16 11 N -0.71 -32.43 5.55 -466.80 -2.59 -35.02 16 12 C 0.27 15.61 5.43 85.63 0.46 16.07 16 13 C -0.56 -31.43 9.28 25.60 0.24 -31.19 16 14 H 0.08 4.32 7.60 -2.91 -0.02 4.29 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 17 Si 0.99 43.28 29.54 68.60 2.03 45.31 16 18 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.41 15.31 8.32 -92.71 -0.77 14.54 16 29 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 30 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -79.95 274.03 2.73 -77.22 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.34 Total: 15.86 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 3.48 Total: -0.26 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -2.30 Total: -92.90 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.81 Total: -45.23 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -79.95 2.73 -77.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400205.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.862 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds