Wall clock time and date at job start Sun Mar 29 2020 22:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47429 * 2 1 4 4 C 1.42897 * 114.00313 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.56132 * 355.68131 * 4 3 2 6 6 C 1.52999 * 117.50396 * 141.37667 * 4 3 2 7 7 C 1.52995 * 60.00336 * 107.48982 * 6 4 3 8 8 H 1.08998 * 117.49883 * 107.51147 * 7 6 4 9 9 C 1.50700 * 117.50051 * 252.51706 * 7 6 4 10 10 O 1.21286 * 120.00120 * 68.59909 * 9 7 6 11 11 N 1.34780 * 120.00000 * 248.60669 * 9 7 6 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 H 1.08999 * 109.47158 * 299.99925 * 1 2 3 22 22 H 1.08999 * 109.47085 * 60.00162 * 1 2 3 23 23 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47090 * 239.99314 * 2 1 3 25 25 H 1.08999 * 109.47085 * 119.99837 * 2 1 3 26 26 H 1.09005 * 117.49425 * 359.97438 * 6 4 3 27 27 H 1.09000 * 117.50086 * 214.98072 * 6 4 3 28 28 H 0.97003 * 119.99349 * 359.97438 * 11 9 7 29 29 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 30 30 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 31 31 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9772 0.5197 0.0731 6 6 4.0512 2.5729 -0.8478 7 6 4.0427 2.6874 0.6779 8 1 4.9915 2.5548 1.1978 9 6 3.0968 3.6847 1.2956 10 8 1.8995 3.4982 1.2428 11 7 3.5812 4.7841 1.9065 12 6 2.6617 5.7539 2.5065 13 6 3.4511 6.8813 3.1205 14 1 4.5299 6.8761 3.0686 15 6 2.7959 7.9226 3.7431 16 7 1.4823 7.9290 3.8060 17 14 3.7741 9.3238 4.4974 18 1 3.9786 10.3877 3.4817 19 1 3.0288 9.8810 5.6547 20 1 5.0926 8.8168 4.9555 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3726 3.2187 -1.4051 27 1 5.0055 2.3646 -1.3315 28 1 4.5388 4.9331 1.9489 29 1 2.0691 5.2632 3.2786 30 1 1.9993 6.1506 1.7373 31 1 1.0214 8.6614 4.2443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379400206.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:20 Heat of formation + Delta-G solvation = -62.153148 kcal Electronic energy + Delta-G solvation = -13927.833210 eV Core-core repulsion = 11403.273365 eV Total energy + Delta-G solvation = -2524.559845 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.31708 -37.50525 -34.90875 -33.94876 -32.19674 -30.62272 -27.44161 -24.11115 -22.75968 -22.09084 -21.65804 -19.35426 -17.61124 -16.30111 -15.51131 -15.38891 -15.13001 -14.72677 -14.16341 -13.72763 -13.30272 -12.61460 -12.44257 -12.27251 -12.00341 -11.77931 -11.69104 -11.05337 -10.97672 -10.86596 -10.82245 -10.27830 -10.20309 -9.33465 -9.05350 -8.70697 -8.66718 -7.73500 -6.11568 -4.18068 3.24813 3.27325 3.33044 3.35752 3.64891 4.08522 4.22903 4.41437 4.92957 5.04518 5.08007 5.17231 5.24355 5.38710 5.41373 5.49506 5.63309 5.81688 5.87397 5.99948 6.16013 6.26058 7.39163 7.46639 7.57805 7.60515 7.75960 8.03930 8.75789 8.87960 9.28245 9.49523 10.98794 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054676 B = 0.005865 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.984871 B = 4772.943859 C = 5178.064344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.320 6.320 4 C 0.046 3.954 5 H 0.112 0.888 6 C -0.164 4.164 7 C -0.191 4.191 8 H 0.122 0.878 9 C 0.523 3.477 10 O -0.530 6.530 11 N -0.714 5.714 12 C 0.251 3.749 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.389 0.611 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 -13.558 -7.447 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.237 6.237 4 C -0.014 4.014 5 H 0.130 0.870 6 C -0.202 4.202 7 C -0.213 4.213 8 H 0.140 0.860 9 C 0.307 3.693 10 O -0.407 6.407 11 N -0.363 5.363 12 C 0.130 3.870 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.524 5.524 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.221 0.779 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.207 -13.395 -7.387 15.865 hybrid contribution 1.194 0.748 0.533 1.507 sum 5.401 -12.646 -6.855 15.365 Atomic orbital electron populations 1.21701 0.93733 1.01593 1.03679 1.22505 0.95885 0.84400 0.99337 1.88234 1.17100 1.24821 1.93563 1.22491 0.83516 0.92807 1.02545 0.87033 1.23375 1.02580 1.02529 0.91720 1.22867 1.01395 1.00326 0.96727 0.86023 1.19394 0.88444 0.82019 0.79481 1.90711 1.15441 1.75915 1.58664 1.46409 1.10882 1.22620 1.56421 1.19059 0.89012 0.85779 0.93133 1.21251 0.93308 1.05932 1.37498 0.91945 1.24960 0.94958 0.98268 0.95887 1.69985 1.07099 1.32368 1.42938 0.86417 0.79813 0.81899 0.78778 1.20486 1.21031 1.19768 0.91394 0.91931 0.91528 0.93867 0.93643 0.87738 0.87627 0.77926 0.95684 0.95701 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.70 6.53 37.16 0.24 0.94 16 3 O -0.32 -5.47 8.48 -57.36 -0.49 -5.96 16 4 C 0.05 0.64 6.40 -26.73 -0.17 0.47 16 5 H 0.11 1.14 7.93 -51.93 -0.41 0.73 16 6 C -0.16 -2.16 10.18 -26.73 -0.27 -2.43 16 7 C -0.19 -2.96 6.19 -91.77 -0.57 -3.53 16 8 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 9 C 0.52 11.29 7.61 -10.98 -0.08 11.21 16 10 O -0.53 -13.74 14.92 -16.58 -0.25 -13.99 16 11 N -0.71 -15.99 5.55 -61.48 -0.34 -16.33 16 12 C 0.25 6.95 5.43 -5.20 -0.03 6.92 16 13 C -0.54 -15.14 9.28 -34.44 -0.32 -15.46 16 14 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 27 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.39 7.46 8.32 -40.82 -0.34 7.12 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -34.14 274.03 -6.66 -40.79 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.51 Total: 2.76 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.92 Total: -1.60 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.40 Total: -42.34 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.73 Total: -19.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.14 -6.66 -40.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400206.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.360 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds