Wall clock time and date at job start Sun Mar 29 2020 22:01:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42895 * 109.47429 * 2 1
4 4 C 1.42897 * 114.00313 * 180.02562 * 3 2 1
5 5 H 1.09002 * 115.56132 * 355.68131 * 4 3 2
6 6 C 1.52999 * 117.50396 * 141.37667 * 4 3 2
7 7 C 1.52995 * 60.00336 * 107.48982 * 6 4 3
8 8 H 1.08998 * 117.49883 * 107.51147 * 7 6 4
9 9 C 1.50700 * 117.50051 * 252.51706 * 7 6 4
10 10 O 1.21286 * 120.00120 * 68.59909 * 9 7 6
11 11 N 1.34780 * 120.00000 * 248.60669 * 9 7 6
12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 7
13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9
14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11
15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11
16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12
17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12
18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13
19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13
20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13
21 21 H 1.08999 * 109.47158 * 299.99925 * 1 2 3
22 22 H 1.08999 * 109.47085 * 60.00162 * 1 2 3
23 23 H 1.09003 * 109.46897 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.47090 * 239.99314 * 2 1 3
25 25 H 1.08999 * 109.47085 * 119.99837 * 2 1 3
26 26 H 1.09005 * 117.49425 * 359.97438 * 6 4 3
27 27 H 1.09000 * 117.50086 * 214.98072 * 6 4 3
28 28 H 0.97003 * 119.99349 * 359.97438 * 11 9 7
29 29 H 1.09004 * 109.47166 * 60.00164 * 12 11 9
30 30 H 1.08994 * 109.47507 * 299.99870 * 12 11 9
31 31 H 0.97005 * 119.99651 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4600 -0.0006
5 1 3.9772 0.5197 0.0731
6 6 4.0512 2.5729 -0.8478
7 6 4.0427 2.6874 0.6779
8 1 4.9915 2.5548 1.1978
9 6 3.0968 3.6847 1.2956
10 8 1.8995 3.4982 1.2428
11 7 3.5812 4.7841 1.9065
12 6 2.6617 5.7539 2.5065
13 6 3.4511 6.8813 3.1205
14 1 4.5299 6.8761 3.0686
15 6 2.7959 7.9226 3.7431
16 7 1.4823 7.9290 3.8060
17 14 3.7741 9.3238 4.4974
18 1 3.9786 10.3877 3.4817
19 1 3.0288 9.8810 5.6547
20 1 5.0926 8.8168 4.9555
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 1.8933 -0.5140 -0.8899
25 1 1.8933 -0.5138 0.8900
26 1 3.3726 3.2187 -1.4051
27 1 5.0055 2.3646 -1.3315
28 1 4.5388 4.9331 1.9489
29 1 2.0691 5.2632 3.2786
30 1 1.9993 6.1506 1.7373
31 1 1.0214 8.6614 4.2443
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379400206.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:01:20
Heat of formation + Delta-G solvation = -87.043875 kcal
Electronic energy + Delta-G solvation = -13928.912553 eV
Core-core repulsion = 11403.273365 eV
Total energy + Delta-G solvation = -2525.639188 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.81617 -38.88469 -36.26168 -35.83398 -34.29242 -31.64627 -29.54245 -25.87766
-23.75295 -23.64203 -22.96710 -21.08040 -19.13926 -18.08133 -17.15005 -16.73707
-16.39658 -16.32900 -15.94903 -15.37406 -14.76013 -14.17959 -13.94571 -13.72709
-13.55004 -13.24163 -12.99009 -12.91587 -12.71858 -12.22959 -12.06759 -11.83659
-11.49657 -11.34435 -10.80629 -10.63226 -9.99212 -9.77392 -8.29922 -6.47333
1.42236 1.45512 1.56867 1.71302 2.32071 2.55590 2.71685 2.96324
3.04956 3.86956 3.89747 4.03499 4.21673 4.25119 4.45341 4.51649
4.52883 4.83365 4.89856 5.03289 5.04290 5.14612 5.22181 5.27225
5.49933 5.73250 5.84843 6.47521 6.64399 6.99146 7.22826 7.59343
8.82740
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.054676 B = 0.005865 C = 0.005406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 511.984871 B = 4772.943859 C = 5178.064344
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.049 3.951
3 O -0.370 6.370
4 C 0.044 3.956
5 H 0.160 0.840
6 C -0.146 4.146
7 C -0.206 4.206
8 H 0.162 0.838
9 C 0.513 3.487
10 O -0.584 6.584
11 N -0.710 5.710
12 C 0.268 3.732
13 C -0.556 4.556
14 H 0.085 0.915
15 C 0.002 3.998
16 N -0.933 5.933
17 Si 0.989 3.011
18 H -0.270 1.270
19 H -0.283 1.283
20 H -0.254 1.254
21 H 0.037 0.963
22 H 0.053 0.947
23 H 0.099 0.901
24 H 0.074 0.926
25 H 0.056 0.944
26 H 0.076 0.924
27 H 0.155 0.845
28 H 0.407 0.593
29 H -0.017 1.017
30 H -0.018 1.018
31 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.470 -14.445 -7.891 18.511
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.027 4.027
3 O -0.288 6.288
4 C -0.014 4.014
5 H 0.177 0.823
6 C -0.184 4.184
7 C -0.227 4.227
8 H 0.180 0.820
9 C 0.301 3.699
10 O -0.464 6.464
11 N -0.360 5.360
12 C 0.145 3.855
13 C -0.594 4.594
14 H 0.103 0.897
15 C -0.198 4.198
16 N -0.572 5.572
17 Si 0.812 3.188
18 H -0.195 1.195
19 H -0.209 1.209
20 H -0.178 1.178
21 H 0.056 0.944
22 H 0.072 0.928
23 H 0.118 0.882
24 H 0.092 0.908
25 H 0.075 0.925
26 H 0.094 0.906
27 H 0.173 0.827
28 H 0.242 0.758
29 H 0.001 0.999
30 H -0.001 1.001
31 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 7.320 -14.312 -7.851 17.890
hybrid contribution 0.158 0.958 0.627 1.156
sum 7.478 -13.355 -7.224 16.925
Atomic orbital electron populations
1.21754 0.94153 1.03150 1.01733 1.22747 0.95741 0.82993 1.01247
1.88189 1.19271 1.27614 1.93753 1.23003 0.82720 0.94230 1.01467
0.82330 1.23506 1.04060 1.01186 0.89606 1.22863 1.01624 0.99715
0.98462 0.82015 1.20572 0.88938 0.82202 0.78218 1.90684 1.18338
1.77033 1.60318 1.46185 1.11058 1.22278 1.56476 1.18487 0.89324
0.86803 0.90889 1.21632 0.94345 1.05938 1.37500 0.89738 1.26136
0.96017 1.01511 0.96104 1.70159 1.09481 1.33647 1.43916 0.85098
0.78502 0.77585 0.77656 1.19509 1.20861 1.17760 0.94371 0.92815
0.88190 0.90827 0.92539 0.90569 0.82708 0.75760 0.99907 1.00056
0.92227
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.60 10.28 71.98 0.74 -2.86 16
2 C 0.05 1.15 6.53 71.98 0.47 1.62 16
3 O -0.37 -12.50 8.48 -127.82 -1.08 -13.58 16
4 C 0.04 1.12 6.40 30.60 0.20 1.32 16
5 H 0.16 2.43 7.93 -2.39 -0.02 2.42 16
6 C -0.15 -3.40 10.18 30.59 0.31 -3.09 16
7 C -0.21 -5.89 6.19 -11.54 -0.07 -5.96 16
8 H 0.16 3.29 8.14 -2.39 -0.02 3.27 16
9 C 0.51 22.63 7.61 87.66 0.67 23.30 16
10 O -0.58 -31.92 14.92 18.11 0.27 -31.65 16
11 N -0.71 -32.43 5.55 -466.80 -2.59 -35.02 16
12 C 0.27 15.63 5.43 85.64 0.46 16.10 16
13 C -0.56 -31.49 9.28 25.60 0.24 -31.26 16
14 H 0.08 4.30 7.60 -2.91 -0.02 4.28 16
15 C 0.00 0.09 5.46 84.66 0.46 0.55 16
16 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16
17 Si 0.99 43.26 29.54 68.60 2.03 45.28 16
18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16
19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16
20 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16
21 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
26 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16
27 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16
28 H 0.41 15.31 8.32 -92.71 -0.77 14.54 16
29 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16
30 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16
31 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16
Total: -1.00 -79.92 274.03 2.73 -77.19
By element:
Atomic # 1 Polarization: 15.60 SS G_CDS: 0.34 Total: 15.94 kcal
Atomic # 6 Polarization: -3.76 SS G_CDS: 3.48 Total: -0.28 kcal
Atomic # 7 Polarization: -90.59 SS G_CDS: -2.30 Total: -92.90 kcal
Atomic # 8 Polarization: -44.42 SS G_CDS: -0.81 Total: -45.23 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal
Total: -79.92 2.73 -77.19 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379400206.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.856 kcal
(2) G-P(sol) polarization free energy of solvation -79.917 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds