Wall clock time and date at job start Sun Mar 29 2020 22:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47429 * 2 1 4 4 C 1.42897 * 114.00313 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.56132 * 355.68131 * 4 3 2 6 6 C 1.52999 * 117.50396 * 141.37667 * 4 3 2 7 7 C 1.52995 * 60.00336 * 107.48982 * 6 4 3 8 8 H 1.08998 * 117.49883 * 107.51147 * 7 6 4 9 9 C 1.50700 * 117.50051 * 252.51706 * 7 6 4 10 10 O 1.21286 * 120.00120 * 68.59909 * 9 7 6 11 11 N 1.34780 * 120.00000 * 248.60669 * 9 7 6 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 H 1.08999 * 109.47158 * 299.99925 * 1 2 3 22 22 H 1.08999 * 109.47085 * 60.00162 * 1 2 3 23 23 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47090 * 239.99314 * 2 1 3 25 25 H 1.08999 * 109.47085 * 119.99837 * 2 1 3 26 26 H 1.09005 * 117.49425 * 359.97438 * 6 4 3 27 27 H 1.09000 * 117.50086 * 214.98072 * 6 4 3 28 28 H 0.97003 * 119.99349 * 359.97438 * 11 9 7 29 29 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 30 30 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 31 31 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9772 0.5197 0.0731 6 6 4.0512 2.5729 -0.8478 7 6 4.0427 2.6874 0.6779 8 1 4.9915 2.5548 1.1978 9 6 3.0968 3.6847 1.2956 10 8 1.8995 3.4982 1.2428 11 7 3.5812 4.7841 1.9065 12 6 2.6617 5.7539 2.5065 13 6 3.4511 6.8813 3.1205 14 1 4.5299 6.8761 3.0686 15 6 2.7959 7.9226 3.7431 16 7 1.4823 7.9290 3.8060 17 14 3.7741 9.3238 4.4974 18 1 3.9786 10.3877 3.4817 19 1 3.0288 9.8810 5.6547 20 1 5.0926 8.8168 4.9555 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3726 3.2187 -1.4051 27 1 5.0055 2.3646 -1.3315 28 1 4.5388 4.9331 1.9489 29 1 2.0691 5.2632 3.2786 30 1 1.9993 6.1506 1.7373 31 1 1.0214 8.6614 4.2443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379400206.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:20 Heat of formation + Delta-G solvation = -87.043875 kcal Electronic energy + Delta-G solvation = -13928.912553 eV Core-core repulsion = 11403.273365 eV Total energy + Delta-G solvation = -2525.639188 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81617 -38.88469 -36.26168 -35.83398 -34.29242 -31.64627 -29.54245 -25.87766 -23.75295 -23.64203 -22.96710 -21.08040 -19.13926 -18.08133 -17.15005 -16.73707 -16.39658 -16.32900 -15.94903 -15.37406 -14.76013 -14.17959 -13.94571 -13.72709 -13.55004 -13.24163 -12.99009 -12.91587 -12.71858 -12.22959 -12.06759 -11.83659 -11.49657 -11.34435 -10.80629 -10.63226 -9.99212 -9.77392 -8.29922 -6.47333 1.42236 1.45512 1.56867 1.71302 2.32071 2.55590 2.71685 2.96324 3.04956 3.86956 3.89747 4.03499 4.21673 4.25119 4.45341 4.51649 4.52883 4.83365 4.89856 5.03289 5.04290 5.14612 5.22181 5.27225 5.49933 5.73250 5.84843 6.47521 6.64399 6.99146 7.22826 7.59343 8.82740 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054676 B = 0.005865 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.984871 B = 4772.943859 C = 5178.064344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.370 6.370 4 C 0.044 3.956 5 H 0.160 0.840 6 C -0.146 4.146 7 C -0.206 4.206 8 H 0.162 0.838 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.710 5.710 12 C 0.268 3.732 13 C -0.556 4.556 14 H 0.085 0.915 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.989 3.011 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.254 1.254 21 H 0.037 0.963 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.407 0.593 29 H -0.017 1.017 30 H -0.018 1.018 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -14.445 -7.891 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.288 6.288 4 C -0.014 4.014 5 H 0.177 0.823 6 C -0.184 4.184 7 C -0.227 4.227 8 H 0.180 0.820 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.360 5.360 12 C 0.145 3.855 13 C -0.594 4.594 14 H 0.103 0.897 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.812 3.188 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.178 1.178 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.118 0.882 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.173 0.827 28 H 0.242 0.758 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.320 -14.312 -7.851 17.890 hybrid contribution 0.158 0.958 0.627 1.156 sum 7.478 -13.355 -7.224 16.925 Atomic orbital electron populations 1.21754 0.94153 1.03150 1.01733 1.22747 0.95741 0.82993 1.01247 1.88189 1.19271 1.27614 1.93753 1.23003 0.82720 0.94230 1.01467 0.82330 1.23506 1.04060 1.01186 0.89606 1.22863 1.01624 0.99715 0.98462 0.82015 1.20572 0.88938 0.82202 0.78218 1.90684 1.18338 1.77033 1.60318 1.46185 1.11058 1.22278 1.56476 1.18487 0.89324 0.86803 0.90889 1.21632 0.94345 1.05938 1.37500 0.89738 1.26136 0.96017 1.01511 0.96104 1.70159 1.09481 1.33647 1.43916 0.85098 0.78502 0.77585 0.77656 1.19509 1.20861 1.17760 0.94371 0.92815 0.88190 0.90827 0.92539 0.90569 0.82708 0.75760 0.99907 1.00056 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 10.28 71.98 0.74 -2.86 16 2 C 0.05 1.15 6.53 71.98 0.47 1.62 16 3 O -0.37 -12.50 8.48 -127.82 -1.08 -13.58 16 4 C 0.04 1.12 6.40 30.60 0.20 1.32 16 5 H 0.16 2.43 7.93 -2.39 -0.02 2.42 16 6 C -0.15 -3.40 10.18 30.59 0.31 -3.09 16 7 C -0.21 -5.89 6.19 -11.54 -0.07 -5.96 16 8 H 0.16 3.29 8.14 -2.39 -0.02 3.27 16 9 C 0.51 22.63 7.61 87.66 0.67 23.30 16 10 O -0.58 -31.92 14.92 18.11 0.27 -31.65 16 11 N -0.71 -32.43 5.55 -466.80 -2.59 -35.02 16 12 C 0.27 15.63 5.43 85.64 0.46 16.10 16 13 C -0.56 -31.49 9.28 25.60 0.24 -31.26 16 14 H 0.08 4.30 7.60 -2.91 -0.02 4.28 16 15 C 0.00 0.09 5.46 84.66 0.46 0.55 16 16 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 17 Si 0.99 43.26 29.54 68.60 2.03 45.28 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 21 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.41 15.31 8.32 -92.71 -0.77 14.54 16 29 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 30 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 31 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -79.92 274.03 2.73 -77.19 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.34 Total: 15.94 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 3.48 Total: -0.28 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -2.30 Total: -92.90 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.81 Total: -45.23 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -79.92 2.73 -77.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400206.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.856 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds