Wall clock time and date at job start Sun Mar 29 2020 22:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47097 * 2 1 4 4 C 1.42898 * 113.99942 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.54907 * 355.58227 * 4 3 2 6 6 C 1.53002 * 117.49971 * 141.25314 * 4 3 2 7 7 C 1.53000 * 117.50097 * 209.91102 * 4 3 2 8 8 H 1.09008 * 117.49673 * 359.97438 * 7 4 3 9 9 C 1.50692 * 117.50104 * 144.97165 * 7 4 3 10 10 O 1.21282 * 119.99963 * 0.02562 * 9 7 4 11 11 N 1.34778 * 120.00351 * 180.02562 * 9 7 4 12 12 C 1.46494 * 120.00083 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.47239 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99402 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00399 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99666 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47292 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47344 * 120.00103 * 17 15 13 20 20 H 1.48498 * 109.47205 * 240.00443 * 17 15 13 21 21 H 1.09005 * 109.46516 * 60.00250 * 1 2 3 22 22 H 1.08991 * 109.47243 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47445 * 300.00631 * 1 2 3 24 24 H 1.08991 * 109.47256 * 239.99800 * 2 1 3 25 25 H 1.08999 * 109.46821 * 119.99113 * 2 1 3 26 26 H 1.09000 * 117.49996 * 215.00756 * 6 4 3 27 27 H 1.08999 * 117.49664 * 0.02562 * 6 4 3 28 28 H 0.97000 * 119.99701 * 359.97438 * 11 9 7 29 29 H 1.09001 * 109.47089 * 299.99127 * 12 11 9 30 30 H 1.08996 * 109.47384 * 60.00050 * 12 11 9 31 31 H 0.97002 * 120.00067 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9769 0.5198 0.0767 6 6 4.0520 2.5709 -0.8487 7 6 4.0420 2.6887 0.6774 8 1 3.3574 3.4112 1.1219 9 6 5.3524 2.5060 1.3987 10 8 5.8825 1.4155 1.4266 11 7 5.9354 3.5545 2.0130 12 6 7.2096 3.3770 2.7138 13 6 7.6431 4.6920 3.3089 14 1 7.0308 5.5719 3.1778 15 6 8.8212 4.7716 4.0207 16 7 9.5670 3.7002 4.1799 17 14 9.3588 6.4017 4.7577 18 1 8.3522 7.4455 4.4379 19 1 9.4768 6.2637 6.2316 20 1 10.6744 6.7917 4.1901 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 5.0065 2.3614 -1.3314 27 1 3.3739 3.2159 -1.4076 28 1 5.5117 4.4267 1.9905 29 1 7.0878 2.6408 3.5084 30 1 7.9662 3.0302 2.0099 31 1 10.3960 3.7562 4.6803 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379400207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:23 Heat of formation + Delta-G solvation = -68.427260 kcal Electronic energy + Delta-G solvation = -13628.659712 eV Core-core repulsion = 11103.827801 eV Total energy + Delta-G solvation = -2524.831911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.44914 -37.87380 -35.00037 -34.10628 -32.30047 -30.89579 -27.53176 -24.17762 -22.99334 -22.14475 -21.72404 -19.49599 -17.62473 -16.68484 -15.64182 -15.59395 -15.31691 -14.77546 -14.34850 -13.99388 -13.28669 -12.78347 -12.69679 -12.41342 -12.10833 -11.88060 -11.79865 -11.26829 -11.06308 -10.92144 -10.91607 -10.37733 -10.30465 -9.39060 -9.31966 -8.95686 -8.74504 -7.89381 -6.17028 -4.23840 3.07074 3.23805 3.30035 3.32358 3.35308 4.01731 4.23433 4.41242 4.87743 4.92136 4.99505 5.07559 5.19300 5.21855 5.33223 5.42931 5.60066 5.72051 5.75063 5.82191 5.96204 6.10083 7.18860 7.29865 7.42744 7.50649 7.66798 7.96383 8.62525 8.77323 9.08899 9.42869 10.93314 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072748 B = 0.004886 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.798535 B = 5729.032147 C = 5805.879142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.048 3.952 5 H 0.124 0.876 6 C -0.158 4.158 7 C -0.188 4.188 8 H 0.124 0.876 9 C 0.528 3.472 10 O -0.560 6.560 11 N -0.705 5.705 12 C 0.248 3.752 13 C -0.543 4.543 14 H 0.064 0.936 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.392 0.608 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.229 -3.053 -8.339 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.278 6.278 4 C -0.011 4.011 5 H 0.141 0.859 6 C -0.196 4.196 7 C -0.209 4.209 8 H 0.142 0.858 9 C 0.312 3.688 10 O -0.440 6.440 11 N -0.352 5.352 12 C 0.127 3.873 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.225 0.775 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.769 -3.727 -8.200 16.453 hybrid contribution 0.340 1.155 0.532 1.317 sum -13.428 -2.571 -7.667 15.676 Atomic orbital electron populations 1.21751 0.93732 1.02248 1.03080 1.22546 0.95322 0.83522 1.00584 1.87784 1.19019 1.26863 1.94090 1.22609 0.81427 0.94668 1.02394 0.85862 1.23409 1.02789 1.01927 0.91426 1.22773 0.98316 1.03517 0.96318 0.85763 1.19464 0.84916 0.84942 0.79436 1.90641 1.65463 1.25740 1.62176 1.46392 1.25309 1.10677 1.52842 1.19146 0.78892 0.97468 0.91755 1.21272 1.07075 0.94828 1.34927 0.91773 1.24959 0.96107 0.97111 0.95886 1.69987 1.13733 1.28305 1.40318 0.86344 0.78605 0.83021 0.78853 1.19601 1.20786 1.20782 0.91927 0.91040 0.91803 0.93076 0.92879 0.87573 0.87540 0.77480 0.95450 0.95464 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.60 6.53 37.16 0.24 0.85 16 3 O -0.36 -4.90 10.60 -35.23 -0.37 -5.28 16 4 C 0.05 0.69 5.95 -26.73 -0.16 0.53 16 5 H 0.12 1.86 7.45 -51.93 -0.39 1.47 16 6 C -0.16 -2.10 10.19 -26.69 -0.27 -2.37 16 7 C -0.19 -2.96 6.14 -91.74 -0.56 -3.52 16 8 H 0.12 1.75 8.14 -51.92 -0.42 1.33 16 9 C 0.53 10.95 7.61 -10.99 -0.08 10.86 16 10 O -0.56 -13.70 16.26 5.56 0.09 -13.61 16 11 N -0.71 -15.32 5.55 -61.48 -0.34 -15.66 16 12 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 13 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 14 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 17 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.39 7.37 8.32 -40.82 -0.34 7.03 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 276.51 15.07 4.17 4.17 Total: -1.00 -32.02 276.51 -6.13 -38.14 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.49 Total: 3.25 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.90 Total: -1.44 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.40 Total: -41.18 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.28 Total: -18.88 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.02 -6.13 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.284 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds