Wall clock time and date at job start Sun Mar 29 2020 22:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47097 * 2 1 4 4 C 1.42898 * 113.99942 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.54907 * 355.58227 * 4 3 2 6 6 C 1.53002 * 117.49971 * 141.25314 * 4 3 2 7 7 C 1.53000 * 117.50097 * 209.91102 * 4 3 2 8 8 H 1.09008 * 117.49673 * 359.97438 * 7 4 3 9 9 C 1.50692 * 117.50104 * 144.97165 * 7 4 3 10 10 O 1.21282 * 119.99963 * 0.02562 * 9 7 4 11 11 N 1.34778 * 120.00351 * 180.02562 * 9 7 4 12 12 C 1.46494 * 120.00083 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.47239 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99402 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00399 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99666 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47292 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47344 * 120.00103 * 17 15 13 20 20 H 1.48498 * 109.47205 * 240.00443 * 17 15 13 21 21 H 1.09005 * 109.46516 * 60.00250 * 1 2 3 22 22 H 1.08991 * 109.47243 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47445 * 300.00631 * 1 2 3 24 24 H 1.08991 * 109.47256 * 239.99800 * 2 1 3 25 25 H 1.08999 * 109.46821 * 119.99113 * 2 1 3 26 26 H 1.09000 * 117.49996 * 215.00756 * 6 4 3 27 27 H 1.08999 * 117.49664 * 0.02562 * 6 4 3 28 28 H 0.97000 * 119.99701 * 359.97438 * 11 9 7 29 29 H 1.09001 * 109.47089 * 299.99127 * 12 11 9 30 30 H 1.08996 * 109.47384 * 60.00050 * 12 11 9 31 31 H 0.97002 * 120.00067 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9769 0.5198 0.0767 6 6 4.0520 2.5709 -0.8487 7 6 4.0420 2.6887 0.6774 8 1 3.3574 3.4112 1.1219 9 6 5.3524 2.5060 1.3987 10 8 5.8825 1.4155 1.4266 11 7 5.9354 3.5545 2.0130 12 6 7.2096 3.3770 2.7138 13 6 7.6431 4.6920 3.3089 14 1 7.0308 5.5719 3.1778 15 6 8.8212 4.7716 4.0207 16 7 9.5670 3.7002 4.1799 17 14 9.3588 6.4017 4.7577 18 1 8.3522 7.4455 4.4379 19 1 9.4768 6.2637 6.2316 20 1 10.6744 6.7917 4.1901 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 5.0065 2.3614 -1.3314 27 1 3.3739 3.2159 -1.4076 28 1 5.5117 4.4267 1.9905 29 1 7.0878 2.6408 3.5084 30 1 7.9662 3.0302 2.0099 31 1 10.3960 3.7562 4.6803 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379400207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:22 Heat of formation + Delta-G solvation = -91.735772 kcal Electronic energy + Delta-G solvation = -13629.670445 eV Core-core repulsion = 11103.827801 eV Total energy + Delta-G solvation = -2525.842644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96722 -39.14152 -36.38203 -35.88815 -34.35441 -31.71538 -29.57902 -25.92355 -23.79774 -23.73772 -23.05513 -21.20735 -19.12743 -18.24546 -17.33830 -16.95707 -16.49621 -16.39939 -16.13983 -15.46287 -14.84372 -14.12252 -14.08217 -13.71535 -13.52091 -13.33454 -13.04788 -12.91421 -12.76158 -12.23669 -12.16033 -11.89385 -11.59661 -11.47519 -10.89206 -10.83405 -10.20067 -9.88354 -8.30795 -6.47578 1.43131 1.44226 1.52264 1.58008 2.10331 2.37668 2.72170 2.89616 3.04376 3.69021 3.83078 4.04079 4.12092 4.18760 4.34940 4.46019 4.51945 4.77787 4.90253 4.99358 5.03640 5.09896 5.20507 5.28182 5.45671 5.65461 5.82262 6.17915 6.62971 6.84737 7.21044 7.41833 8.81757 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072748 B = 0.004886 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.798535 B = 5729.032147 C = 5805.879142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.366 6.366 4 C 0.049 3.951 5 H 0.112 0.888 6 C -0.133 4.133 7 C -0.196 4.196 8 H 0.147 0.853 9 C 0.525 3.475 10 O -0.604 6.604 11 N -0.701 5.701 12 C 0.264 3.736 13 C -0.557 4.557 14 H 0.084 0.916 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.987 3.013 18 H -0.253 1.253 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.137 0.863 28 H 0.409 0.591 29 H -0.012 1.012 30 H -0.010 1.010 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.783 -1.357 -9.011 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.285 6.285 4 C -0.010 4.010 5 H 0.129 0.871 6 C -0.170 4.170 7 C -0.217 4.217 8 H 0.165 0.835 9 C 0.313 3.687 10 O -0.487 6.487 11 N -0.349 5.349 12 C 0.141 3.859 13 C -0.595 4.595 14 H 0.102 0.898 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.810 3.190 18 H -0.177 1.177 19 H -0.204 1.204 20 H -0.203 1.203 21 H 0.085 0.915 22 H 0.111 0.889 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.245 0.755 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.374 -2.013 -8.895 17.875 hybrid contribution 0.784 0.514 0.710 1.176 sum -14.589 -1.499 -8.184 16.795 Atomic orbital electron populations 1.21762 0.91855 1.03686 1.03023 1.22821 0.96845 0.82333 1.01010 1.87775 1.18001 1.28653 1.94078 1.22532 0.82153 0.94034 1.02278 0.87078 1.23526 1.03032 1.00991 0.89491 1.22660 0.95747 1.05571 0.97765 0.83525 1.20330 0.86168 0.83716 0.78491 1.90616 1.67103 1.27409 1.63532 1.46145 1.23903 1.12100 1.52763 1.18608 0.80396 0.96767 0.90101 1.21647 1.07656 0.95218 1.34938 0.89807 1.26079 0.96037 1.01358 0.96128 1.70141 1.14385 1.31187 1.41237 0.85079 0.78384 0.77900 0.77661 1.17676 1.20408 1.20331 0.91486 0.88899 0.92308 0.91823 0.93387 0.87735 0.84533 0.75473 0.99367 0.99172 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.91 6.53 71.98 0.47 1.38 16 3 O -0.37 -9.29 10.60 -148.98 -1.58 -10.87 16 4 C 0.05 1.36 5.95 30.60 0.18 1.54 16 5 H 0.11 3.35 7.45 -2.39 -0.02 3.33 16 6 C -0.13 -3.22 10.19 30.62 0.31 -2.90 16 7 C -0.20 -5.89 6.14 -11.52 -0.07 -5.96 16 8 H 0.15 3.76 8.14 -2.38 -0.02 3.74 16 9 C 0.53 22.03 7.61 87.65 0.67 22.70 16 10 O -0.60 -30.63 16.26 -3.04 -0.05 -30.68 16 11 N -0.70 -30.78 5.55 -466.80 -2.59 -33.37 16 12 C 0.26 14.78 5.43 85.64 0.46 15.25 16 13 C -0.56 -30.69 9.28 25.60 0.24 -30.45 16 14 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 15 C 0.00 0.20 5.46 84.66 0.46 0.66 16 16 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 17 Si 0.99 42.53 29.54 68.60 2.03 44.55 16 18 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.41 15.00 8.32 -92.71 -0.77 14.23 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -70.75 276.51 1.90 -68.84 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.34 Total: 16.91 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 3.47 Total: 0.79 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.30 Total: -89.54 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.63 Total: -41.55 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.75 1.90 -68.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379400207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.893 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds