Wall clock time and date at job start Sun Mar 29 2020 22:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 C 1.53007 * 109.46856 * 119.99930 * 2 1 3 5 5 C 1.52994 * 109.47046 * 65.00085 * 4 2 1 6 6 N 1.46904 * 109.47076 * 179.97438 * 5 4 2 7 7 C 1.47960 * 110.99975 * 190.00073 * 6 5 4 8 8 C 1.53940 * 86.18020 * 222.41827 * 7 6 5 9 9 O 1.42900 * 113.73337 * 269.26005 * 8 7 6 10 10 C 1.50694 * 113.73364 * 138.08016 * 8 7 6 11 11 H 1.08000 * 120.00563 * 1.89939 * 10 8 7 12 12 C 1.37885 * 119.99902 * 181.90102 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.48189 * 111.06803 * 90.56485 * 6 5 4 19 19 H 1.09001 * 109.46960 * 59.99893 * 1 2 3 20 20 H 1.08997 * 109.47030 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47040 * 299.99858 * 1 2 3 22 22 H 1.08997 * 109.47040 * 240.00142 * 2 1 3 23 23 H 1.08999 * 109.47163 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47399 * 299.99839 * 3 2 1 25 25 H 1.09001 * 109.47363 * 59.99741 * 3 2 1 26 26 H 1.08994 * 109.47018 * 304.99942 * 4 2 1 27 27 H 1.08995 * 109.46394 * 185.00027 * 4 2 1 28 28 H 1.09003 * 109.47110 * 59.99953 * 5 4 2 29 29 H 1.09005 * 109.47409 * 300.00082 * 5 4 2 30 30 H 1.09000 * 113.75922 * 108.10132 * 7 6 5 31 31 H 1.08996 * 113.85941 * 336.74802 * 7 6 5 32 32 H 0.96699 * 113.99865 * 178.10203 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 34 34 H 1.08996 * 113.76245 * 23.24297 * 18 6 5 35 35 H 1.08999 * 113.82580 * 251.80952 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1254 -2.8881 2.3872 7 6 1.9650 -4.3531 2.2561 8 6 1.4852 -4.3279 3.7186 9 8 2.5350 -4.5064 4.6715 10 6 0.2957 -5.2148 3.9820 11 1 -0.1176 -5.8149 3.1849 12 6 -0.2649 -5.2603 5.2409 13 7 0.2387 -4.5300 6.2118 14 14 -1.7398 -6.3592 5.5673 15 1 -2.1495 -6.2287 6.9887 16 1 -2.8649 -5.9517 4.6880 17 1 -1.3772 -7.7713 5.2848 18 6 1.1164 -2.8538 3.4720 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6054 -0.2617 2.1370 27 1 3.1263 -0.6443 1.2952 28 1 2.0699 -2.6550 0.3003 29 1 0.5489 -2.2724 1.1420 30 1 2.9045 -4.8865 2.1113 31 1 1.1935 -4.6504 1.5459 32 1 2.2423 -4.4623 5.5921 33 1 -0.1560 -4.5617 7.0973 34 1 0.0956 -2.7098 3.1180 35 1 1.3791 -2.1915 4.2969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379407815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:10 Heat of formation + Delta-G solvation = -37.582144 kcal Electronic energy + Delta-G solvation = -14712.771576 eV Core-core repulsion = 12325.110304 eV Total energy + Delta-G solvation = -2387.661272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98557 -36.44246 -34.04597 -32.05391 -30.02290 -27.11446 -26.64361 -25.02704 -24.17798 -21.13836 -19.71824 -18.55382 -17.16565 -15.30931 -15.11303 -14.97970 -14.20798 -14.14774 -13.80142 -13.40359 -12.61416 -12.53282 -12.14451 -11.93572 -11.70362 -11.41752 -11.35943 -11.16866 -10.93850 -10.70550 -10.50956 -10.46130 -10.25533 -10.04896 -9.86506 -9.22536 -8.61026 -8.16243 -7.72362 -6.23236 -4.33176 3.22183 3.27531 3.30047 4.27363 4.72511 4.98781 5.01837 5.08483 5.21541 5.50365 5.65651 5.76596 5.80825 5.89472 5.90368 5.99612 6.07963 6.11769 6.18080 6.25610 6.33888 6.40891 6.46665 6.60919 6.66611 6.74898 7.09139 7.29167 7.41037 7.78541 8.03324 8.09137 8.68300 9.36618 9.65824 10.82597 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043078 B = 0.007067 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.826533 B = 3961.142295 C = 4220.612366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.103 4.103 5 C 0.019 3.981 6 N -0.482 5.482 7 C 0.008 3.992 8 C 0.243 3.757 9 O -0.572 6.572 10 C -0.538 4.538 11 H 0.064 0.936 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.902 3.098 15 H -0.285 1.285 16 H -0.276 1.276 17 H -0.274 1.274 18 C -0.011 4.011 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.387 0.613 33 H 0.271 0.729 34 H 0.058 0.942 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 7.055 -8.617 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.141 4.141 5 C -0.110 4.110 6 N -0.205 5.205 7 C -0.120 4.120 8 C 0.202 3.798 9 O -0.383 6.383 10 C -0.577 4.577 11 H 0.082 0.918 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.730 3.270 15 H -0.210 1.210 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.140 4.140 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.949 7.336 -8.858 11.540 hybrid contribution -2.061 -0.686 0.446 2.217 sum -1.112 6.651 -8.411 10.780 Atomic orbital electron populations 1.21894 0.95529 1.01958 1.01227 1.21121 0.95767 0.95956 0.98774 1.21823 1.00849 0.96227 1.01334 1.21496 1.01054 0.94707 0.96846 1.22686 0.98064 0.95079 0.95199 1.68496 1.41123 1.05937 1.04903 1.24086 0.99847 0.89243 0.98858 1.19761 0.85267 0.89717 0.85055 1.86042 1.36392 1.95038 1.20829 1.21626 1.13315 1.26398 0.96335 0.91804 1.25057 0.97265 0.94931 0.95846 1.69425 1.41918 1.39937 1.02532 0.86488 0.82245 0.81006 0.77298 1.21011 1.20118 1.19958 1.24747 0.92708 1.02588 0.93930 0.93273 0.92380 0.92753 0.91579 0.92813 0.93143 0.92785 0.92153 0.91704 0.92346 0.94261 0.90860 0.91942 0.75887 0.91913 0.92391 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.95 37.16 0.33 -1.46 16 2 C -0.10 -1.20 2.92 -90.62 -0.26 -1.47 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C -0.10 -1.58 4.99 -26.73 -0.13 -1.71 16 5 C 0.02 0.33 4.55 -3.83 -0.02 0.31 16 6 N -0.48 -10.43 6.16 -238.02 -1.47 -11.90 16 7 C 0.01 0.19 7.34 -2.76 -0.02 0.17 16 8 C 0.24 6.32 1.40 -90.83 -0.13 6.19 16 9 O -0.57 -15.83 13.48 -35.23 -0.48 -16.31 16 10 C -0.54 -14.61 8.61 -34.44 -0.30 -14.91 16 11 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 12 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 13 N -0.90 -24.38 11.20 55.43 0.62 -23.76 16 14 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 C -0.01 -0.25 7.37 -2.63 -0.02 -0.27 16 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.04 0.70 5.81 -51.93 -0.30 0.40 16 30 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.06 1.32 7.88 -51.93 -0.41 0.92 16 32 H 0.39 10.81 6.60 45.56 0.30 11.11 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.06 1.37 7.44 -51.93 -0.39 0.98 16 35 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 282.32 15.07 4.25 4.25 Total: -1.00 -27.66 282.32 -7.72 -35.38 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.33 Total: 9.36 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.30 Total: -12.57 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.85 Total: -35.66 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.48 Total: -16.31 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.66 -7.72 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379407815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.204 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds