Wall clock time and date at job start Sun Mar 29 2020 22:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 C 1.53007 * 109.46856 * 119.99930 * 2 1 3 5 5 C 1.52994 * 109.47046 * 65.00085 * 4 2 1 6 6 N 1.46904 * 109.47076 * 179.97438 * 5 4 2 7 7 C 1.47960 * 110.99975 * 190.00073 * 6 5 4 8 8 C 1.53940 * 86.18020 * 222.41827 * 7 6 5 9 9 O 1.42900 * 113.73337 * 269.26005 * 8 7 6 10 10 C 1.50694 * 113.73364 * 138.08016 * 8 7 6 11 11 H 1.08000 * 120.00563 * 1.89939 * 10 8 7 12 12 C 1.37885 * 119.99902 * 181.90102 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.48189 * 111.06803 * 90.56485 * 6 5 4 19 19 H 1.09001 * 109.46960 * 59.99893 * 1 2 3 20 20 H 1.08997 * 109.47030 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47040 * 299.99858 * 1 2 3 22 22 H 1.08997 * 109.47040 * 240.00142 * 2 1 3 23 23 H 1.08999 * 109.47163 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47399 * 299.99839 * 3 2 1 25 25 H 1.09001 * 109.47363 * 59.99741 * 3 2 1 26 26 H 1.08994 * 109.47018 * 304.99942 * 4 2 1 27 27 H 1.08995 * 109.46394 * 185.00027 * 4 2 1 28 28 H 1.09003 * 109.47110 * 59.99953 * 5 4 2 29 29 H 1.09005 * 109.47409 * 300.00082 * 5 4 2 30 30 H 1.09000 * 113.75922 * 108.10132 * 7 6 5 31 31 H 1.08996 * 113.85941 * 336.74802 * 7 6 5 32 32 H 0.96699 * 113.99865 * 178.10203 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 34 34 H 1.08996 * 113.76245 * 23.24297 * 18 6 5 35 35 H 1.08999 * 113.82580 * 251.80952 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1254 -2.8881 2.3872 7 6 1.9650 -4.3531 2.2561 8 6 1.4852 -4.3279 3.7186 9 8 2.5350 -4.5064 4.6715 10 6 0.2957 -5.2148 3.9820 11 1 -0.1176 -5.8149 3.1849 12 6 -0.2649 -5.2603 5.2409 13 7 0.2387 -4.5300 6.2118 14 14 -1.7398 -6.3592 5.5673 15 1 -2.1495 -6.2287 6.9887 16 1 -2.8649 -5.9517 4.6880 17 1 -1.3772 -7.7713 5.2848 18 6 1.1164 -2.8538 3.4720 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6054 -0.2617 2.1370 27 1 3.1263 -0.6443 1.2952 28 1 2.0699 -2.6550 0.3003 29 1 0.5489 -2.2724 1.1420 30 1 2.9045 -4.8865 2.1113 31 1 1.1935 -4.6504 1.5459 32 1 2.2423 -4.4623 5.5921 33 1 -0.1560 -4.5617 7.0973 34 1 0.0956 -2.7098 3.1180 35 1 1.3791 -2.1915 4.2969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379407815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:10 Heat of formation + Delta-G solvation = -57.332098 kcal Electronic energy + Delta-G solvation = -14713.627998 eV Core-core repulsion = 12325.110304 eV Total energy + Delta-G solvation = -2388.517694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78023 -37.67391 -35.91626 -34.13253 -31.49994 -28.48942 -28.00674 -26.89218 -25.83334 -22.67984 -20.81620 -20.47236 -19.18650 -17.15354 -16.84891 -16.47069 -15.87792 -15.64623 -15.22228 -14.81343 -14.17985 -13.93538 -13.67664 -13.41885 -13.21700 -13.02268 -12.95064 -12.72014 -12.42092 -12.30043 -12.22523 -11.83383 -11.56339 -11.45471 -11.36208 -11.11035 -10.62647 -10.13050 -9.53803 -8.24676 -6.43164 1.42262 1.43753 1.52004 2.36941 2.95939 3.13401 3.83329 3.95207 4.06406 4.15640 4.20824 4.29653 4.47389 4.56145 4.65476 4.69276 4.80207 4.84195 4.90076 4.93976 5.02179 5.12788 5.13580 5.19711 5.32331 5.41650 5.46273 5.50730 5.61508 5.73640 5.98680 6.36574 6.61911 7.29815 7.49972 8.80114 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043078 B = 0.007067 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.826533 B = 3961.142295 C = 4220.612366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.097 4.097 5 C 0.018 3.982 6 N -0.486 5.486 7 C 0.017 3.983 8 C 0.216 3.784 9 O -0.585 6.585 10 C -0.563 4.563 11 H 0.064 0.936 12 C 0.027 3.973 13 N -0.919 5.919 14 Si 0.968 3.032 15 H -0.280 1.280 16 H -0.269 1.269 17 H -0.272 1.272 18 C 0.001 3.999 19 H 0.068 0.932 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.381 0.619 33 H 0.274 0.726 34 H 0.056 0.944 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 7.330 -9.947 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.135 4.135 5 C -0.110 4.110 6 N -0.209 5.209 7 C -0.112 4.112 8 C 0.175 3.825 9 O -0.395 6.395 10 C -0.601 4.601 11 H 0.082 0.918 12 C -0.173 4.173 13 N -0.560 5.560 14 Si 0.792 3.208 15 H -0.205 1.205 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.128 4.128 19 H 0.087 0.913 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.272 7.621 -10.205 12.739 hybrid contribution -1.811 -0.754 0.847 2.137 sum -1.539 6.867 -9.358 11.709 Atomic orbital electron populations 1.21892 0.95256 1.01509 1.01919 1.21092 0.95944 0.96728 0.97352 1.21802 1.01082 0.95082 1.02042 1.21456 1.00785 0.93343 0.97939 1.22779 0.98156 0.96198 0.93864 1.68433 1.40647 1.05700 1.06115 1.24032 1.00179 0.90030 0.96971 1.20159 0.85194 0.90842 0.86288 1.86025 1.37408 1.95269 1.20818 1.21890 1.14142 1.27160 0.96914 0.91800 1.25829 0.99848 0.96087 0.95538 1.69510 1.42902 1.40710 1.02833 0.85466 0.78943 0.79062 0.77299 1.20486 1.19441 1.19671 1.24480 0.93071 1.00897 0.94357 0.91276 0.93384 0.93411 0.90580 0.92491 0.91372 0.93169 0.93693 0.92037 0.90701 0.94236 0.90723 0.90501 0.76562 0.91666 0.92542 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.95 71.98 0.64 -2.63 16 2 C -0.09 -2.08 2.92 -10.79 -0.03 -2.11 16 3 C -0.14 -2.74 9.19 71.98 0.66 -2.07 16 4 C -0.10 -2.85 4.99 30.59 0.15 -2.70 16 5 C 0.02 0.62 4.55 86.30 0.39 1.02 16 6 N -0.49 -20.79 6.16 -910.15 -5.61 -26.39 16 7 C 0.02 0.74 7.34 86.41 0.63 1.37 16 8 C 0.22 11.29 1.40 -10.89 -0.02 11.27 16 9 O -0.58 -32.94 13.48 -148.98 -2.01 -34.95 16 10 C -0.56 -30.57 8.61 25.60 0.22 -30.35 16 11 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 12 C 0.03 1.43 5.40 84.66 0.46 1.89 16 13 N -0.92 -50.25 11.20 21.45 0.24 -50.01 16 14 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 C 0.00 0.07 7.37 86.37 0.64 0.71 16 19 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 20 H 0.05 1.14 6.56 -2.39 -0.02 1.13 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 29 H 0.04 1.35 5.81 -2.38 -0.01 1.34 16 30 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.08 3.16 7.88 -2.39 -0.02 3.14 16 32 H 0.38 21.86 6.60 -74.06 -0.49 21.38 16 33 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.06 2.69 7.44 -2.39 -0.02 2.67 16 35 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -57.87 282.32 -1.04 -58.90 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.56 Total: 32.22 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.75 Total: -23.61 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -5.36 Total: -76.40 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -2.01 Total: -34.95 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -57.87 -1.04 -58.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379407815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.571 kcal (2) G-P(sol) polarization free energy of solvation -57.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds