Wall clock time and date at job start Sun Mar 29 2020 22:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 7 7 H 1.09002 * 109.47051 * 304.99389 * 6 5 3 8 8 N 1.46494 * 109.47265 * 64.99762 * 6 5 3 9 9 C 1.36939 * 120.00184 * 204.99882 * 8 6 5 10 10 H 1.08007 * 119.99640 * 0.02562 * 9 8 6 11 11 C 1.38808 * 120.00345 * 179.97438 * 9 8 6 12 12 N 1.31621 * 119.99536 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00194 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47440 * 60.00508 * 13 11 9 15 15 H 1.48505 * 109.47244 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47442 * 300.00439 * 13 11 9 17 17 C 1.52999 * 109.47021 * 184.99992 * 6 5 3 18 18 C 1.53002 * 117.49919 * 248.74296 * 17 6 5 19 19 C 1.53008 * 117.49616 * 180.08431 * 17 6 5 20 20 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 21 21 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 23 23 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 24 24 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 25 25 H 0.96998 * 120.00158 * 24.99954 * 8 6 5 26 26 H 0.97009 * 119.99851 * 179.97438 * 12 11 9 27 27 H 1.08997 * 115.55328 * 34.41572 * 17 6 5 28 28 H 1.09002 * 117.49295 * 0.02562 * 18 17 6 29 29 H 1.08999 * 117.49899 * 145.02038 * 18 17 6 30 30 H 1.09001 * 117.49734 * 214.97516 * 19 17 6 31 31 H 1.08994 * 117.49697 * 359.97438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.0000 2.7422 -0.0119 7 1 3.5345 3.2554 -0.8533 8 7 3.5837 3.3793 1.2398 9 6 3.3839 4.7333 1.2855 10 1 3.5329 5.3314 0.3986 11 6 2.9889 5.3370 2.4714 12 7 2.8068 4.6080 3.5521 13 14 2.7156 7.1838 2.5335 14 1 1.6517 7.5596 1.5681 15 1 2.3020 7.5772 3.9044 16 1 3.9764 7.8830 2.1776 17 6 5.5221 2.8235 -0.1439 18 6 6.3106 3.3243 1.0679 19 6 6.1559 4.2160 -0.1668 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 3.9595 0.7833 0.8836 24 1 3.9525 0.7785 -0.8964 25 1 3.4495 2.8422 2.0363 26 1 2.5311 5.0299 4.3810 27 1 5.9826 2.0508 -0.7596 28 1 5.7449 3.5955 1.9592 29 1 7.2899 2.8814 1.2492 30 1 7.0335 4.3592 -0.7972 31 1 5.4883 5.0740 -0.0882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379412934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:16 Heat of formation + Delta-G solvation = -46.799322 kcal Electronic energy + Delta-G solvation = -14646.445213 eV Core-core repulsion = 12122.551160 eV Total energy + Delta-G solvation = -2523.894053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.91281 -37.53762 -35.84006 -33.39889 -31.82803 -29.29558 -27.33824 -24.42546 -22.98260 -21.48555 -20.38781 -18.95678 -17.15172 -16.95913 -16.03568 -15.95613 -14.99070 -14.49125 -13.73129 -13.70622 -12.98753 -12.82747 -12.54586 -11.87883 -11.65437 -11.15520 -11.03410 -10.75967 -10.73212 -10.44779 -10.36522 -10.03139 -9.84587 -9.52003 -9.42689 -9.09942 -8.80717 -6.87096 -5.66518 -2.93376 2.86112 3.17566 3.50382 3.54730 3.55582 4.60603 4.72363 5.25213 5.34907 5.37901 5.42838 5.55394 5.64081 5.75188 5.80563 5.85383 5.92952 6.03146 6.18292 6.43006 6.57154 6.71246 6.87892 6.90472 7.06614 7.34229 7.80075 8.38383 8.50694 9.62404 10.16785 10.52133 11.56392 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.011561 C = 0.008564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.101644 B = 2421.349934 C = 3268.767227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.450 3.550 4 O -0.469 6.469 5 C -0.112 4.112 6 C 0.213 3.787 7 H 0.059 0.941 8 N -0.708 5.708 9 C -0.220 4.220 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.935 5.935 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.287 1.287 17 C -0.180 4.180 18 C -0.164 4.164 19 C -0.176 4.176 20 H 0.057 0.943 21 H 0.093 0.907 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.382 0.618 26 H 0.253 0.747 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 -8.770 -7.422 11.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.292 6.292 3 C 0.290 3.710 4 O -0.352 6.352 5 C -0.151 4.151 6 C 0.102 3.898 7 H 0.077 0.923 8 N -0.349 5.349 9 C -0.351 4.351 10 H 0.086 0.914 11 C -0.210 4.210 12 N -0.584 5.584 13 Si 0.733 3.267 14 H -0.215 1.215 15 H -0.219 1.219 16 H -0.214 1.214 17 C -0.201 4.201 18 C -0.201 4.201 19 C -0.213 4.213 20 H 0.076 0.924 21 H 0.111 0.889 22 H 0.080 0.920 23 H 0.119 0.881 24 H 0.116 0.884 25 H 0.216 0.784 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.316 -8.253 -7.436 11.186 hybrid contribution -0.402 0.868 0.362 1.023 sum 0.914 -7.385 -7.074 10.267 Atomic orbital electron populations 1.23115 0.77422 1.02696 1.02418 1.86486 1.22697 1.34779 1.85269 1.23868 0.92395 0.81118 0.73589 1.90782 1.66570 1.35646 1.42181 1.21715 0.87167 1.01459 1.04751 1.19560 0.89896 0.88291 0.92068 0.92287 1.42278 1.80389 1.05575 1.06612 1.19066 1.37337 0.83566 0.95111 0.91357 1.24654 1.02770 0.97463 0.96077 1.69642 1.54225 1.34104 1.00464 0.86340 0.77900 0.85994 0.76423 1.21478 1.21908 1.21394 1.23178 0.97300 0.97028 1.02604 1.22925 0.99304 1.03160 0.94686 1.22852 1.01802 0.95096 1.01545 0.92437 0.88896 0.92010 0.88097 0.88422 0.78405 0.93718 0.89686 0.86234 0.91334 0.91040 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.03 10.57 -39.26 -0.41 -6.45 16 3 C 0.45 8.39 7.82 36.00 0.28 8.67 16 4 O -0.47 -10.76 15.10 -18.76 -0.28 -11.05 16 5 C -0.11 -1.83 5.34 -27.89 -0.15 -1.98 16 6 C 0.21 4.21 2.26 -67.94 -0.15 4.06 16 7 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 8 N -0.71 -17.39 2.78 -53.43 -0.15 -17.54 16 9 C -0.22 -6.04 8.15 -15.06 -0.12 -6.16 16 10 H 0.07 1.86 6.91 -52.48 -0.36 1.50 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.94 -28.46 13.06 55.49 0.72 -27.74 16 13 Si 0.90 22.99 29.55 -169.99 -5.02 17.96 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 C -0.18 -3.16 5.71 -90.61 -0.52 -3.68 16 18 C -0.16 -3.09 9.74 -26.69 -0.26 -3.35 16 19 C -0.18 -3.24 9.87 -26.69 -0.26 -3.50 16 20 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 21 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 23 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 24 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 26 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 28 H 0.12 2.73 6.68 -51.93 -0.35 2.38 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 2.16 6.22 -51.93 -0.32 1.83 16 LS Contribution 266.23 15.07 4.01 4.01 Total: -1.00 -31.85 266.23 -5.62 -37.47 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.28 Total: 8.20 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.21 Total: -4.88 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.58 Total: -45.28 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.70 Total: -17.49 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.85 -5.62 -37.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379412934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.325 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds