Wall clock time and date at job start Sun Mar 29 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 7 7 H 1.09002 * 109.47051 * 304.99389 * 6 5 3 8 8 N 1.46494 * 109.47265 * 64.99762 * 6 5 3 9 9 C 1.36939 * 120.00184 * 204.99882 * 8 6 5 10 10 H 1.08007 * 119.99640 * 0.02562 * 9 8 6 11 11 C 1.38808 * 120.00345 * 179.97438 * 9 8 6 12 12 N 1.31621 * 119.99536 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00194 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47440 * 60.00508 * 13 11 9 15 15 H 1.48505 * 109.47244 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47442 * 300.00439 * 13 11 9 17 17 C 1.52999 * 109.47021 * 184.99992 * 6 5 3 18 18 C 1.53002 * 117.49919 * 248.74296 * 17 6 5 19 19 C 1.53008 * 117.49616 * 180.08431 * 17 6 5 20 20 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 21 21 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 23 23 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 24 24 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 25 25 H 0.96998 * 120.00158 * 24.99954 * 8 6 5 26 26 H 0.97009 * 119.99851 * 179.97438 * 12 11 9 27 27 H 1.08997 * 115.55328 * 34.41572 * 17 6 5 28 28 H 1.09002 * 117.49295 * 0.02562 * 18 17 6 29 29 H 1.08999 * 117.49899 * 145.02038 * 18 17 6 30 30 H 1.09001 * 117.49734 * 214.97516 * 19 17 6 31 31 H 1.08994 * 117.49697 * 359.97438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.0000 2.7422 -0.0119 7 1 3.5345 3.2554 -0.8533 8 7 3.5837 3.3793 1.2398 9 6 3.3839 4.7333 1.2855 10 1 3.5329 5.3314 0.3986 11 6 2.9889 5.3370 2.4714 12 7 2.8068 4.6080 3.5521 13 14 2.7156 7.1838 2.5335 14 1 1.6517 7.5596 1.5681 15 1 2.3020 7.5772 3.9044 16 1 3.9764 7.8830 2.1776 17 6 5.5221 2.8235 -0.1439 18 6 6.3106 3.3243 1.0679 19 6 6.1559 4.2160 -0.1668 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 3.9595 0.7833 0.8836 24 1 3.9525 0.7785 -0.8964 25 1 3.4495 2.8422 2.0363 26 1 2.5311 5.0299 4.3810 27 1 5.9826 2.0508 -0.7596 28 1 5.7449 3.5955 1.9592 29 1 7.2899 2.8814 1.2492 30 1 7.0335 4.3592 -0.7972 31 1 5.4883 5.0740 -0.0882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379412934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:15 Heat of formation + Delta-G solvation = -67.319831 kcal Electronic energy + Delta-G solvation = -14647.335049 eV Core-core repulsion = 12122.551160 eV Total energy + Delta-G solvation = -2524.783889 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.35618 -39.08012 -37.28956 -35.25775 -33.57451 -31.11299 -28.61912 -26.13095 -24.81715 -22.97974 -21.77465 -20.52033 -19.18482 -18.39671 -17.44747 -17.35485 -16.58024 -16.30319 -15.44773 -15.37241 -14.64579 -14.26238 -14.04301 -13.45808 -12.98792 -12.84274 -12.68993 -12.62176 -12.48871 -12.11387 -11.92639 -11.69297 -11.57902 -11.35007 -10.98529 -10.80712 -10.56320 -8.91531 -7.86616 -5.10335 1.41413 1.44013 1.46832 1.51549 1.90654 2.59221 3.18854 3.47445 3.89697 3.93388 4.08380 4.33419 4.35988 4.37284 4.42226 4.52062 4.64426 4.67404 4.81033 4.97474 5.01365 5.22643 5.34566 5.45590 5.55129 5.67906 5.76577 6.35120 6.96746 7.41808 8.16595 8.39118 9.37164 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.011561 C = 0.008564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.101644 B = 2421.349934 C = 3268.767227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.450 3.550 4 O -0.524 6.524 5 C -0.105 4.105 6 C 0.205 3.795 7 H 0.040 0.960 8 N -0.715 5.715 9 C -0.202 4.202 10 H 0.066 0.934 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.957 3.043 14 H -0.289 1.289 15 H -0.298 1.298 16 H -0.278 1.278 17 C -0.161 4.161 18 C -0.170 4.170 19 C -0.181 4.181 20 H 0.058 0.942 21 H 0.136 0.864 22 H 0.044 0.956 23 H 0.115 0.885 24 H 0.147 0.853 25 H 0.370 0.630 26 H 0.245 0.755 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -10.287 -9.093 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.285 6.285 3 C 0.294 3.706 4 O -0.411 6.411 5 C -0.143 4.143 6 C 0.095 3.905 7 H 0.058 0.942 8 N -0.354 5.354 9 C -0.335 4.335 10 H 0.084 0.916 11 C -0.271 4.271 12 N -0.623 5.623 13 Si 0.788 3.212 14 H -0.216 1.216 15 H -0.225 1.225 16 H -0.204 1.204 17 C -0.182 4.182 18 C -0.207 4.207 19 C -0.218 4.218 20 H 0.077 0.923 21 H 0.155 0.845 22 H 0.063 0.937 23 H 0.133 0.867 24 H 0.165 0.835 25 H 0.202 0.798 26 H 0.054 0.946 27 H 0.150 0.850 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.572 -9.803 -9.162 13.662 hybrid contribution -0.807 1.245 0.783 1.678 sum 1.765 -8.558 -8.379 12.106 Atomic orbital electron populations 1.23417 0.75796 1.05331 1.01695 1.86476 1.24279 1.33235 1.84502 1.24370 0.93355 0.80959 0.71937 1.90769 1.67868 1.37481 1.44985 1.21731 0.85699 0.99193 1.07671 1.19778 0.91428 0.90153 0.89094 0.94205 1.42374 1.80539 1.04551 1.07943 1.19311 1.34483 0.85147 0.94512 0.91578 1.25317 1.04469 1.01064 0.96230 1.69786 1.56616 1.35248 1.00681 0.85437 0.77899 0.82063 0.75814 1.21554 1.22475 1.20378 1.23118 0.95235 0.97684 1.02141 1.22784 1.00421 1.04241 0.93275 1.22849 1.02585 0.94372 1.01994 0.92277 0.84547 0.93731 0.86728 0.83507 0.79820 0.94602 0.85016 0.90808 0.88322 0.87702 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.37 -11.10 10.57 -51.41 -0.54 -11.64 16 3 C 0.45 16.26 7.82 71.23 0.56 16.82 16 4 O -0.52 -24.30 15.10 21.94 0.33 -23.97 16 5 C -0.11 -3.13 5.34 29.85 0.16 -2.97 16 6 C 0.20 7.80 2.26 44.99 0.10 7.90 16 7 H 0.04 1.69 7.89 -2.39 -0.02 1.67 16 8 N -0.72 -35.55 2.78 -322.95 -0.90 -36.45 16 9 C -0.20 -11.36 8.15 84.03 0.69 -10.67 16 10 H 0.07 3.68 6.91 -2.91 -0.02 3.66 16 11 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 12 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 13 Si 0.96 48.50 29.55 68.60 2.03 50.53 16 14 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 15 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 16 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 17 C -0.16 -5.15 5.71 -10.79 -0.06 -5.21 16 18 C -0.17 -6.10 9.74 30.62 0.30 -5.80 16 19 C -0.18 -6.28 9.87 30.62 0.30 -5.98 16 20 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 21 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.04 1.27 8.13 -2.39 -0.02 1.25 16 23 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 24 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 25 H 0.37 20.05 7.80 -92.71 -0.72 19.33 16 26 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 27 H 0.13 3.10 8.11 -2.39 -0.02 3.08 16 28 H 0.07 3.40 6.68 -2.39 -0.02 3.38 16 29 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.07 2.85 6.22 -2.39 -0.01 2.83 16 Total: -1.00 -71.72 266.23 5.31 -66.41 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.40 Total: 24.09 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 3.71 Total: -8.19 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -0.61 Total: -97.22 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.21 Total: -35.61 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -71.72 5.31 -66.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379412934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.909 kcal (2) G-P(sol) polarization free energy of solvation -71.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds