Wall clock time and date at job start Sun Mar 29 2020 22:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46504 * 119.99917 * 2 1 4 4 C 1.50700 * 109.47023 * 269.99637 * 3 2 1 5 5 H 1.08000 * 120.00102 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00038 * 180.02562 * 4 3 2 7 7 N 1.31507 * 119.99798 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99948 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47073 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47483 * 119.99703 * 8 6 4 11 11 H 1.48498 * 109.46865 * 239.99789 * 8 6 4 12 12 C 1.34777 * 120.00423 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00345 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99722 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47361 * 180.02562 * 14 12 2 16 16 C 1.54037 * 113.81449 * 86.49302 * 15 14 12 17 17 O 1.44573 * 85.38193 * 136.86604 * 16 15 14 18 18 C 1.44177 * 93.32946 * 335.80455 * 17 16 15 19 19 H 1.08993 * 109.47463 * 270.00364 * 1 2 3 20 20 H 1.08997 * 109.47025 * 30.00697 * 1 2 3 21 21 H 1.09009 * 109.46770 * 150.00126 * 1 2 3 22 22 H 1.08997 * 109.47180 * 29.99430 * 3 2 1 23 23 H 1.09005 * 109.47288 * 149.99802 * 3 2 1 24 24 H 0.97006 * 119.99593 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.47325 * 60.00406 * 14 12 2 26 26 H 1.09004 * 109.47596 * 300.00244 * 14 12 2 27 27 H 1.09002 * 112.99772 * 314.67047 * 15 14 12 28 28 H 1.08998 * 113.86554 * 251.07302 * 16 15 14 29 29 H 1.09005 * 113.86612 * 22.78379 * 16 15 14 30 30 H 1.09001 * 113.86262 * 270.04398 * 18 17 16 31 31 H 1.08999 * 113.98669 * 138.35214 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4377 3.4169 -3.4340 9 1 2.8598 2.4169 -4.3673 10 1 2.8006 4.7380 -3.6668 11 1 4.9002 3.5245 -3.6679 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4722 0.0017 15 6 2.3797 -3.6352 0.0027 16 6 2.8494 -4.0507 1.4097 17 8 2.6718 -5.4068 0.9411 18 6 1.7141 -5.0227 -0.0659 19 1 -0.3634 0.0001 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8901 -0.5139 22 1 1.6083 2.0284 0.5137 23 1 3.1499 1.1385 0.5139 24 1 4.0310 4.4435 -0.8505 25 1 0.7585 -2.5307 -0.8880 26 1 0.7591 -2.5295 0.8919 27 1 3.1926 -3.5011 -0.7110 28 1 3.8853 -3.7882 1.6242 29 1 2.1619 -3.7658 2.2062 30 1 0.6809 -5.0338 0.2811 31 1 1.8486 -5.5295 -1.0215 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379413592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:58 Heat of formation + Delta-G solvation = -51.825911 kcal Electronic energy + Delta-G solvation = -14292.349660 eV Core-core repulsion = 11768.237637 eV Total energy + Delta-G solvation = -2524.112022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.37318 -38.65331 -34.82883 -32.74835 -31.93496 -28.14027 -26.51311 -26.39553 -25.39392 -22.64590 -20.06443 -18.48926 -16.59273 -16.57513 -16.14695 -15.77125 -15.33791 -14.83549 -14.67834 -14.07017 -13.06630 -12.79785 -12.54645 -12.22391 -12.03761 -11.88068 -11.47985 -11.22262 -10.95547 -10.78032 -10.62446 -10.40853 -10.17590 -9.62932 -9.61646 -8.90392 -8.45654 -7.65983 -6.06166 -4.11010 3.28324 3.35289 3.38157 3.43620 3.73862 3.91279 4.39263 4.45000 4.89030 5.09655 5.24669 5.28457 5.29913 5.48757 5.52526 5.62365 5.70371 5.83385 5.92488 6.09205 6.14243 6.18799 6.33151 7.03899 7.42629 7.52481 7.90369 8.21746 8.40461 8.88660 9.08114 9.54320 11.01995 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047873 B = 0.006820 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.735312 B = 4104.361813 C = 4231.269635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.503 3.497 13 O -0.542 6.542 14 C -0.140 4.140 15 C -0.136 4.136 16 C 0.043 3.957 17 O -0.388 6.388 18 C 0.036 3.964 19 H 0.044 0.956 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.031 0.969 23 H 0.044 0.956 24 H 0.263 0.737 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 -11.619 1.865 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.289 3.711 13 O -0.420 6.420 14 C -0.180 4.180 15 C -0.154 4.154 16 C -0.034 4.034 17 O -0.307 6.307 18 C -0.041 4.041 19 H 0.062 0.938 20 H 0.092 0.908 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.009 -11.666 1.991 13.755 hybrid contribution -0.042 0.704 -1.050 1.265 sum -7.051 -10.962 0.940 13.068 Atomic orbital electron populations 1.21634 0.81498 1.02575 1.00365 1.48185 1.06161 1.07957 1.71347 1.19293 0.92571 0.78170 0.97508 1.21473 1.36422 1.06275 0.92325 0.92451 1.24948 0.95357 0.96401 0.97477 1.69943 1.38428 1.14344 1.30686 0.86437 0.78113 0.78302 0.84533 1.19827 1.20931 1.20841 1.20299 0.88161 0.85090 0.77532 1.90664 1.13911 1.87242 1.50150 1.21796 0.98978 0.93443 1.03785 1.24121 0.98963 0.93196 0.99157 1.24078 1.02761 0.80630 0.95903 1.89703 1.60242 1.27849 1.52868 1.24017 0.93572 0.93605 0.92898 0.93785 0.90798 0.92451 0.95055 0.93835 0.92748 0.88941 0.89384 0.86934 0.88710 0.90349 0.90335 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.24 59.84 0.61 1.89 16 2 N -0.60 -12.65 2.86 -182.96 -0.52 -13.18 16 3 C 0.24 6.39 5.16 -5.19 -0.03 6.36 16 4 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.50 10.15 7.67 -10.99 -0.08 10.06 16 13 O -0.54 -13.34 15.37 5.56 0.09 -13.25 16 14 C -0.14 -1.93 4.10 -27.88 -0.11 -2.04 16 15 C -0.14 -1.86 3.35 -89.54 -0.30 -2.16 16 16 C 0.04 0.58 8.79 37.64 0.33 0.91 16 17 O -0.39 -5.55 12.47 -35.23 -0.44 -5.99 16 18 C 0.04 0.40 8.79 37.64 0.33 0.73 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 21 H 0.06 0.70 6.44 -51.92 -0.33 0.36 16 22 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 23 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 26 H 0.09 1.00 7.84 -51.93 -0.41 0.59 16 27 H 0.11 1.77 7.74 -51.93 -0.40 1.37 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -33.45 267.34 -5.20 -38.65 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.40 Total: -3.26 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 0.33 Total: 2.10 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.21 Total: -39.13 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.35 Total: -19.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.45 -5.20 -38.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379413592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.173 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds