Wall clock time and date at job start Sun Mar 29 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 C 1.52999 * 113.53824 * 175.42093 * 3 2 1 5 5 N 1.46901 * 109.46952 * 317.15796 * 4 3 2 6 6 C 1.46892 * 111.00111 * 287.94984 * 5 4 3 7 7 C 1.46904 * 110.99822 * 163.99476 * 5 4 3 8 8 C 1.50705 * 109.47073 * 190.00024 * 7 5 4 9 9 H 1.07999 * 119.99639 * 0.02562 * 8 7 5 10 10 C 1.37880 * 119.99891 * 180.02562 * 8 7 5 11 11 N 1.31515 * 119.99986 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99720 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47414 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47313 * 119.99614 * 12 10 8 15 15 H 1.48501 * 109.46753 * 239.99554 * 12 10 8 16 16 C 1.53364 * 114.56382 * 309.66509 * 3 2 1 17 17 O 1.43351 * 88.44810 * 86.60882 * 16 3 2 18 18 C 1.43353 * 88.31828 * 28.14800 * 17 16 3 19 19 H 1.09002 * 109.47302 * 300.00710 * 1 2 3 20 20 H 1.08998 * 109.46835 * 60.00045 * 1 2 3 21 21 H 1.09004 * 109.47509 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47091 * 239.99795 * 2 1 3 23 23 H 1.08998 * 109.46835 * 119.99955 * 2 1 3 24 24 H 1.09005 * 109.46786 * 77.15464 * 4 3 2 25 25 H 1.08995 * 109.47540 * 197.15469 * 4 3 2 26 26 H 1.09006 * 109.47203 * 65.69175 * 6 5 4 27 27 H 1.08998 * 109.47656 * 185.68731 * 6 5 4 28 28 H 1.09000 * 109.47533 * 305.69190 * 6 5 4 29 29 H 1.09000 * 109.47153 * 310.00106 * 7 5 4 30 30 H 1.08998 * 109.46592 * 70.00014 * 7 5 4 31 31 H 0.96995 * 119.99807 * 180.02562 * 11 10 8 32 32 H 1.08997 * 113.39537 * 331.70715 * 16 3 2 33 33 H 1.09005 * 113.39243 * 201.50471 * 16 3 2 34 34 H 1.09005 * 113.38879 * 86.74999 * 18 17 16 35 35 H 1.09001 * 113.38893 * 216.94617 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5619 1.5525 0.1120 5 7 4.0489 0.6002 1.1190 6 6 3.6932 1.0398 2.4747 7 6 5.4986 0.3978 0.9945 8 6 5.9216 -0.7553 1.8679 9 1 5.1870 -1.2849 2.4561 10 6 7.2466 -1.1338 1.9158 11 7 8.1410 -0.4891 1.1990 12 14 7.7708 -2.5635 2.9978 13 1 6.5831 -3.1167 3.6970 14 1 8.3875 -3.6206 2.1568 15 1 8.7585 -2.0893 4.0002 16 6 1.4131 2.3404 -1.0737 17 8 0.3439 2.6195 -0.1606 18 6 1.2618 2.3939 0.9171 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5138 0.8900 24 1 4.0146 1.3241 -0.8530 25 1 3.8322 2.5656 0.4094 26 1 2.6096 1.0174 2.5913 27 1 4.1509 0.3725 3.2049 28 1 4.0548 2.0556 2.6339 29 1 5.7469 0.1774 -0.0437 30 1 6.0199 1.3020 1.3087 31 1 9.0730 -0.7557 1.2325 32 1 1.0929 1.7947 -1.9613 33 1 2.0175 3.2154 -1.3130 34 1 1.8267 3.2830 1.1978 35 1 0.8089 1.8952 1.7740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379418141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:51 Heat of formation + Delta-G solvation = -12.073592 kcal Electronic energy + Delta-G solvation = -14967.885078 eV Core-core repulsion = 12581.329940 eV Total energy + Delta-G solvation = -2386.555138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11127 -36.49414 -33.24219 -32.29835 -29.60941 -27.22074 -26.28213 -25.82871 -23.58515 -22.80040 -20.36093 -18.44670 -16.49785 -16.16708 -15.85225 -15.22832 -14.65583 -14.35876 -14.11880 -13.67603 -13.09925 -12.57996 -12.18498 -11.95730 -11.91174 -11.51747 -11.37331 -11.04419 -10.90864 -10.79028 -10.70724 -10.53067 -10.26683 -9.81268 -9.78494 -9.42378 -9.13703 -8.45751 -7.25389 -6.04340 -4.05501 3.29831 3.37407 3.42086 4.13986 4.29197 4.43422 4.87326 5.14179 5.29175 5.31784 5.39984 5.48895 5.62317 5.68458 5.75195 5.92933 5.96719 6.06453 6.14202 6.18729 6.23474 6.36095 6.38625 6.45088 6.56565 6.73860 6.83473 7.27398 7.33068 7.78971 8.07019 8.18441 8.53389 9.02673 9.58878 11.06651 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053315 B = 0.006953 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.056082 B = 4026.123393 C = 4184.941315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.112 4.112 4 C 0.066 3.934 5 N -0.534 5.534 6 C 0.035 3.965 7 C 0.192 3.808 8 C -0.506 4.506 9 H 0.064 0.936 10 C 0.054 3.946 11 N -0.899 5.899 12 Si 0.897 3.103 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.034 3.966 17 O -0.370 6.370 18 C 0.035 3.965 19 H 0.051 0.949 20 H 0.052 0.948 21 H 0.045 0.955 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.008 0.992 29 H 0.029 0.971 30 H -0.010 1.010 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 4.061 -1.988 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.064 4.064 5 N -0.258 5.258 6 C -0.114 4.114 7 C 0.066 3.934 8 C -0.544 4.544 9 H 0.082 0.918 10 C -0.147 4.147 11 N -0.539 5.539 12 Si 0.725 3.275 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.044 4.044 17 O -0.289 6.289 18 C -0.042 4.042 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.920 3.681 -2.133 12.656 hybrid contribution 1.078 0.132 0.672 1.278 sum -10.841 3.814 -1.461 11.585 Atomic orbital electron populations 1.21858 0.96394 1.00274 1.01982 1.21037 0.94131 0.93033 1.03961 1.23190 0.96208 0.96599 0.95308 1.21988 0.92400 0.94328 0.97637 1.62076 1.18483 1.43184 1.02044 1.22289 0.98943 0.97878 0.92304 1.19751 0.80143 0.95811 0.97649 1.21203 0.92723 1.14884 1.25619 0.91769 1.24997 0.96642 0.97021 0.96035 1.69968 1.02044 1.40981 1.40908 0.86452 0.78545 0.82242 0.80247 1.19655 1.21013 1.21148 1.23752 0.88064 0.97685 0.94884 1.89798 1.27683 1.92768 1.18634 1.23869 0.90306 0.97546 0.92491 0.92989 0.92863 0.93621 0.91673 0.89408 0.90981 0.95546 0.93581 0.90630 0.97314 0.95270 0.99263 0.92993 0.89873 0.90785 0.90956 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.57 37.16 0.32 -1.60 16 2 C -0.08 -1.24 5.47 -26.73 -0.15 -1.38 16 3 C -0.11 -1.63 0.98 -154.13 -0.15 -1.78 16 4 C 0.07 1.13 4.71 -3.82 -0.02 1.11 16 5 N -0.53 -11.05 3.57 -244.37 -0.87 -11.92 16 6 C 0.03 0.65 8.89 60.06 0.53 1.18 16 7 C 0.19 4.90 4.71 -4.97 -0.02 4.88 16 8 C -0.51 -14.00 8.38 -34.44 -0.29 -14.29 16 9 H 0.06 1.76 7.18 -52.49 -0.38 1.38 16 10 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 11 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 12 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.03 0.44 7.34 24.59 0.18 0.62 16 17 O -0.37 -5.34 10.80 -35.23 -0.38 -5.72 16 18 C 0.03 0.47 6.01 24.58 0.15 0.62 16 19 H 0.05 0.68 6.48 -51.93 -0.34 0.34 16 20 H 0.05 0.68 6.64 -51.93 -0.35 0.34 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.09 1.45 7.29 -51.93 -0.38 1.08 16 24 H 0.07 1.27 7.81 -51.93 -0.41 0.86 16 25 H 0.03 0.45 7.64 -51.93 -0.40 0.05 16 26 H 0.05 0.74 6.33 -51.93 -0.33 0.41 16 27 H 0.07 1.55 6.65 -51.93 -0.35 1.21 16 28 H 0.01 0.16 8.00 -51.93 -0.42 -0.26 16 29 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 30 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.08 0.98 7.79 -51.93 -0.40 0.58 16 33 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.08 1.11 6.75 -51.93 -0.35 0.76 16 LS Contribution 274.16 15.07 4.13 4.13 Total: -1.00 -29.12 274.16 -6.67 -35.80 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -5.72 Total: -3.68 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 0.46 Total: -9.22 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.14 Total: -37.77 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.38 Total: -5.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.12 -6.67 -35.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379418141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.722 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds