Wall clock time and date at job start Sun Mar 29 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 C 1.52999 * 113.53824 * 175.42093 * 3 2 1 5 5 N 1.46901 * 109.46952 * 317.15796 * 4 3 2 6 6 C 1.46892 * 111.00111 * 287.94984 * 5 4 3 7 7 C 1.46904 * 110.99822 * 163.99476 * 5 4 3 8 8 C 1.50705 * 109.47073 * 190.00024 * 7 5 4 9 9 H 1.07999 * 119.99639 * 0.02562 * 8 7 5 10 10 C 1.37880 * 119.99891 * 180.02562 * 8 7 5 11 11 N 1.31515 * 119.99986 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99720 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47414 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47313 * 119.99614 * 12 10 8 15 15 H 1.48501 * 109.46753 * 239.99554 * 12 10 8 16 16 C 1.53364 * 114.56382 * 309.66509 * 3 2 1 17 17 O 1.43351 * 88.44810 * 86.60882 * 16 3 2 18 18 C 1.43353 * 88.31828 * 28.14800 * 17 16 3 19 19 H 1.09002 * 109.47302 * 300.00710 * 1 2 3 20 20 H 1.08998 * 109.46835 * 60.00045 * 1 2 3 21 21 H 1.09004 * 109.47509 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47091 * 239.99795 * 2 1 3 23 23 H 1.08998 * 109.46835 * 119.99955 * 2 1 3 24 24 H 1.09005 * 109.46786 * 77.15464 * 4 3 2 25 25 H 1.08995 * 109.47540 * 197.15469 * 4 3 2 26 26 H 1.09006 * 109.47203 * 65.69175 * 6 5 4 27 27 H 1.08998 * 109.47656 * 185.68731 * 6 5 4 28 28 H 1.09000 * 109.47533 * 305.69190 * 6 5 4 29 29 H 1.09000 * 109.47153 * 310.00106 * 7 5 4 30 30 H 1.08998 * 109.46592 * 70.00014 * 7 5 4 31 31 H 0.96995 * 119.99807 * 180.02562 * 11 10 8 32 32 H 1.08997 * 113.39537 * 331.70715 * 16 3 2 33 33 H 1.09005 * 113.39243 * 201.50471 * 16 3 2 34 34 H 1.09005 * 113.38879 * 86.74999 * 18 17 16 35 35 H 1.09001 * 113.38893 * 216.94617 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5619 1.5525 0.1120 5 7 4.0489 0.6002 1.1190 6 6 3.6932 1.0398 2.4747 7 6 5.4986 0.3978 0.9945 8 6 5.9216 -0.7553 1.8679 9 1 5.1870 -1.2849 2.4561 10 6 7.2466 -1.1338 1.9158 11 7 8.1410 -0.4891 1.1990 12 14 7.7708 -2.5635 2.9978 13 1 6.5831 -3.1167 3.6970 14 1 8.3875 -3.6206 2.1568 15 1 8.7585 -2.0893 4.0002 16 6 1.4131 2.3404 -1.0737 17 8 0.3439 2.6195 -0.1606 18 6 1.2618 2.3939 0.9171 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5138 0.8900 24 1 4.0146 1.3241 -0.8530 25 1 3.8322 2.5656 0.4094 26 1 2.6096 1.0174 2.5913 27 1 4.1509 0.3725 3.2049 28 1 4.0548 2.0556 2.6339 29 1 5.7469 0.1774 -0.0437 30 1 6.0199 1.3020 1.3087 31 1 9.0730 -0.7557 1.2325 32 1 1.0929 1.7947 -1.9613 33 1 2.0175 3.2154 -1.3130 34 1 1.8267 3.2830 1.1978 35 1 0.8089 1.8952 1.7740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379418141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:51 Heat of formation + Delta-G solvation = -30.781729 kcal Electronic energy + Delta-G solvation = -14968.696324 eV Core-core repulsion = 12581.329940 eV Total energy + Delta-G solvation = -2387.366384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.24355 -38.13357 -34.91710 -33.93959 -30.94557 -29.07754 -27.69784 -27.01679 -25.21807 -24.10959 -22.11814 -19.59349 -18.51753 -17.31065 -17.15242 -16.65690 -16.38919 -15.89107 -15.47055 -15.19451 -14.66925 -13.99980 -13.72558 -13.60791 -13.07480 -12.92023 -12.88310 -12.71698 -12.51814 -12.31673 -12.13718 -12.05453 -11.95638 -11.54761 -11.06991 -10.93136 -10.61889 -10.48522 -8.97545 -8.19901 -6.29416 1.41402 1.42314 1.55598 2.40835 3.04937 3.10703 3.13489 3.45711 3.92403 4.05384 4.34509 4.38276 4.47267 4.54938 4.61110 4.63642 4.70186 4.76315 4.81295 4.86128 5.04431 5.10961 5.16965 5.22040 5.26530 5.32102 5.34773 5.43117 5.65817 5.67004 6.06881 6.34598 6.65817 6.87808 7.40429 8.91405 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053315 B = 0.006953 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.056082 B = 4026.123393 C = 4184.941315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.114 4.114 4 C 0.067 3.933 5 N -0.538 5.538 6 C 0.039 3.961 7 C 0.206 3.794 8 C -0.520 4.520 9 H 0.064 0.936 10 C 0.000 4.000 11 N -0.936 5.936 12 Si 0.968 3.032 13 H -0.263 1.263 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.040 3.960 17 O -0.379 6.379 18 C 0.038 3.962 19 H 0.051 0.949 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.012 0.988 29 H 0.003 0.997 30 H -0.039 1.039 31 H 0.264 0.736 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.887 3.857 -1.545 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 C -0.115 4.115 4 C -0.062 4.062 5 N -0.261 5.261 6 C -0.109 4.109 7 C 0.080 3.920 8 C -0.558 4.558 9 H 0.082 0.918 10 C -0.198 4.198 11 N -0.577 5.577 12 Si 0.793 3.207 13 H -0.187 1.187 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.037 4.037 17 O -0.297 6.297 18 C -0.038 4.038 19 H 0.070 0.930 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.021 0.979 30 H -0.022 1.022 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.232 3.487 -1.691 13.787 hybrid contribution 1.453 0.239 0.499 1.555 sum -11.779 3.725 -1.192 12.411 Atomic orbital electron populations 1.21766 0.94728 1.00964 1.02095 1.20978 0.95468 0.92851 1.02669 1.23137 0.93881 0.97126 0.97345 1.22036 0.94412 0.93605 0.96114 1.61996 1.15099 1.45172 1.03860 1.22266 1.00651 0.97342 0.90639 1.19399 0.83031 0.94043 0.95512 1.21515 0.93075 1.15404 1.25821 0.91760 1.25908 0.96702 0.99784 0.97370 1.70091 1.02480 1.42695 1.42419 0.85349 0.78307 0.78685 0.78366 1.18666 1.20511 1.20521 1.23813 0.87509 0.97753 0.94657 1.89802 1.28089 1.92812 1.19045 1.23895 0.89985 0.97498 0.92460 0.92958 0.92535 0.92717 0.92294 0.91441 0.91858 0.95057 0.90474 0.92634 0.96983 0.97882 1.02178 0.92752 0.88555 0.89485 0.90147 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.57 71.98 0.62 -2.66 16 2 C -0.08 -2.30 5.47 30.59 0.17 -2.13 16 3 C -0.11 -3.11 0.98 -51.94 -0.05 -3.16 16 4 C 0.07 2.27 4.71 86.30 0.41 2.68 16 5 N -0.54 -22.31 3.57 -927.05 -3.31 -25.62 16 6 C 0.04 1.45 8.89 127.69 1.13 2.59 16 7 C 0.21 10.87 4.71 85.56 0.40 11.27 16 8 C -0.52 -29.17 8.38 25.60 0.21 -28.95 16 9 H 0.06 3.53 7.18 -2.91 -0.02 3.51 16 10 C 0.00 0.00 5.46 84.66 0.46 0.47 16 11 N -0.94 -56.23 13.29 21.45 0.28 -55.95 16 12 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 C 0.04 0.93 7.34 63.84 0.47 1.40 16 17 O -0.38 -9.88 10.80 -148.98 -1.61 -11.48 16 18 C 0.04 0.95 6.01 63.84 0.38 1.33 16 19 H 0.05 1.24 6.48 -2.39 -0.02 1.22 16 20 H 0.06 1.31 6.64 -2.39 -0.02 1.29 16 21 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.07 2.17 7.29 -2.39 -0.02 2.15 16 24 H 0.06 2.24 7.81 -2.38 -0.02 2.22 16 25 H 0.03 1.04 7.64 -2.39 -0.02 1.02 16 26 H 0.08 2.36 6.33 -2.38 -0.02 2.34 16 27 H 0.05 2.27 6.65 -2.39 -0.02 2.25 16 28 H 0.01 0.42 8.00 -2.39 -0.02 0.41 16 29 H 0.00 0.17 7.86 -2.39 -0.02 0.16 16 30 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.10 2.02 7.79 -2.39 -0.02 2.00 16 33 H 0.09 1.84 8.11 -2.38 -0.02 1.82 16 34 H 0.08 1.89 7.89 -2.38 -0.02 1.87 16 35 H 0.09 2.13 6.75 -2.39 -0.02 2.12 16 Total: -1.00 -61.93 274.16 2.65 -59.28 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.04 Total: 4.85 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.21 Total: -17.18 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -3.02 Total: -81.57 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.61 Total: -11.48 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -61.93 2.65 -59.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379418141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.501 kcal (2) G-P(sol) polarization free energy of solvation -61.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds