Wall clock time and date at job start Sun Mar 29 2020 22:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 C 1.52998 * 110.27408 * 57.91078 * 4 3 2 6 6 C 1.54596 * 110.31171 * 295.71710 * 4 3 2 7 7 C 1.54930 * 102.92430 * 219.12667 * 6 4 3 8 8 N 1.48538 * 103.22884 * 37.41337 * 7 6 4 9 9 C 1.46897 * 111.00058 * 200.28284 * 8 7 6 10 10 C 1.50704 * 109.47113 * 307.39412 * 9 8 7 11 11 H 1.08004 * 120.00191 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00213 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00259 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99922 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47811 * 89.99846 * 14 12 10 16 16 H 1.48508 * 109.46962 * 209.99975 * 14 12 10 17 17 H 1.48498 * 109.47143 * 329.99453 * 14 12 10 18 18 C 1.47906 * 105.81642 * 320.79162 * 8 7 6 19 19 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 20 20 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 22 22 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 23 23 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 24 24 H 1.08997 * 109.47349 * 60.69961 * 5 4 3 25 25 H 1.09003 * 109.47510 * 180.70545 * 5 4 3 26 26 H 1.08999 * 109.47022 * 300.70273 * 5 4 3 27 27 H 1.09011 * 110.72284 * 337.48229 * 6 4 3 28 28 H 1.08997 * 110.72627 * 100.76174 * 6 4 3 29 29 H 1.08998 * 110.66625 * 278.97439 * 7 6 4 30 30 H 1.09002 * 110.66922 * 155.84431 * 7 6 4 31 31 H 1.09002 * 109.47718 * 67.39299 * 9 8 7 32 32 H 1.09001 * 109.47433 * 187.39588 * 9 8 7 33 33 H 0.96996 * 120.00323 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.91735 * 265.97977 * 18 8 7 35 35 H 1.08999 * 109.91175 * 144.68578 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0042 0.3826 -1.2149 6 6 4.0202 0.5154 1.3072 7 6 5.3057 1.3105 1.6475 8 7 4.9603 2.7002 1.2530 9 6 6.1715 3.5052 1.0463 10 6 7.0569 3.4017 2.2614 11 1 6.7503 2.7985 3.1032 12 6 8.2579 4.0777 2.2990 13 7 9.0303 3.9877 3.3596 14 14 8.7873 5.1228 0.8440 15 1 8.2855 6.5090 1.0214 16 1 10.2699 5.1399 0.7603 17 1 8.2276 4.5500 -0.4065 18 6 4.1823 2.5822 0.0006 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6886 1.8464 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 3.6982 0.8938 -2.1276 25 1 5.0905 0.2939 -1.1949 26 1 3.5581 -0.6115 -1.1883 27 1 3.2770 0.6275 2.0968 28 1 4.2504 -0.5367 1.1393 29 1 6.1505 0.9437 1.0645 30 1 5.5207 1.2557 2.7147 31 1 6.7088 3.1359 0.1728 32 1 5.8928 4.5470 0.8877 33 1 9.8754 4.4631 3.3859 34 1 4.8446 2.6848 -0.8590 35 1 3.4087 3.3495 -0.0295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381654608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:38 Heat of formation + Delta-G solvation = -69.077236 kcal Electronic energy + Delta-G solvation = -14787.005312 eV Core-core repulsion = 12397.978311 eV Total energy + Delta-G solvation = -2389.027001 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60745 -38.36699 -35.49748 -33.95393 -30.86393 -29.47251 -28.29339 -26.92226 -25.26119 -24.00120 -21.70261 -20.17263 -18.80035 -17.30648 -16.96853 -16.61165 -16.53165 -15.79276 -15.37201 -15.13040 -14.57916 -14.17677 -14.11276 -13.52328 -13.45264 -13.16001 -12.89691 -12.63428 -12.41272 -12.29533 -12.03231 -11.90958 -11.66255 -11.53396 -11.36072 -11.25444 -10.80740 -10.51760 -9.16077 -8.30361 -6.35068 1.33866 1.35131 1.46028 2.33035 2.84119 3.02728 3.33131 3.67679 3.74190 4.03486 4.32693 4.39203 4.43351 4.52026 4.57586 4.64649 4.66703 4.69460 4.79928 4.86421 4.90567 4.96447 5.00210 5.07224 5.17768 5.26574 5.28297 5.41398 5.49748 5.96246 6.18402 6.29955 6.58743 6.71123 7.29285 8.85856 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060715 B = 0.006771 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.059347 B = 4134.548353 C = 4295.165360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.084 3.916 4 C -0.066 4.066 5 C -0.127 4.127 6 C -0.098 4.098 7 C 0.054 3.946 8 N -0.525 5.525 9 C 0.163 3.837 10 C -0.525 4.525 11 H 0.040 0.960 12 C 0.010 3.990 13 N -0.947 5.947 14 Si 0.949 3.051 15 H -0.264 1.264 16 H -0.280 1.280 17 H -0.252 1.252 18 C 0.041 3.959 19 H 0.051 0.949 20 H 0.096 0.904 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.027 0.973 30 H 0.053 0.947 31 H -0.010 1.010 32 H 0.029 0.971 33 H 0.268 0.732 34 H 0.043 0.957 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.143 -6.115 -10.993 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.008 3.992 4 C -0.067 4.067 5 C -0.184 4.184 6 C -0.136 4.136 7 C -0.074 4.074 8 N -0.249 5.249 9 C 0.035 3.965 10 C -0.563 4.563 11 H 0.058 0.942 12 C -0.188 4.188 13 N -0.587 5.587 14 Si 0.772 3.228 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.176 1.176 18 C -0.087 4.087 19 H 0.069 0.931 20 H 0.115 0.885 21 H 0.062 0.938 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.007 0.993 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.173 -5.948 -10.518 19.396 hybrid contribution 1.100 0.469 -0.539 1.312 sum -14.073 -5.479 -11.057 18.716 Atomic orbital electron populations 1.22902 0.79825 1.03671 1.00636 1.87838 1.21026 1.28102 1.95528 1.22497 0.91492 0.84545 1.00701 1.21387 0.94187 0.94599 0.96521 1.21753 1.00155 1.00383 0.96124 1.22502 0.95746 0.98739 0.96596 1.22914 0.96424 0.88297 0.99736 1.64632 1.20196 1.11606 1.28510 1.20124 0.87744 0.94057 0.94584 1.21328 1.03201 1.29689 1.02118 0.94169 1.25863 0.96260 0.97700 0.98977 1.70045 1.12920 1.44717 1.31036 0.85691 0.77568 0.79551 0.80013 1.18840 1.20590 1.17609 1.23015 0.97445 0.96871 0.91347 0.93080 0.88509 0.93788 0.91825 0.93209 0.91525 0.93820 0.91229 0.91196 0.90190 0.95498 0.92836 0.99260 0.95279 0.92342 0.93828 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.46 9.77 -148.98 -1.46 -10.92 16 3 C 0.08 1.99 4.50 71.98 0.32 2.31 16 4 C -0.07 -1.86 0.77 -51.30 -0.04 -1.90 16 5 C -0.13 -3.16 8.05 71.98 0.58 -2.58 16 6 C -0.10 -3.11 5.96 31.80 0.19 -2.92 16 7 C 0.05 2.24 5.55 86.65 0.48 2.72 16 8 N -0.53 -22.67 5.39 -887.55 -4.78 -27.45 16 9 C 0.16 8.06 3.86 85.56 0.33 8.39 16 10 C -0.53 -31.10 9.11 25.60 0.23 -30.87 16 11 H 0.04 2.64 6.77 -2.91 -0.02 2.62 16 12 C 0.01 0.57 5.47 84.65 0.46 1.03 16 13 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 14 Si 0.95 44.60 27.47 68.60 1.88 46.48 16 15 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 18 C 0.04 1.37 6.03 86.45 0.52 1.89 16 19 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 20 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 21 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.21 8.11 -2.39 -0.02 1.19 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.65 7.66 -2.39 -0.02 1.63 16 27 H 0.07 2.21 7.84 -2.38 -0.02 2.19 16 28 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 29 H 0.03 1.16 8.02 -2.39 -0.02 1.14 16 30 H 0.05 2.46 7.15 -2.39 -0.02 2.44 16 31 H -0.01 -0.50 6.87 -2.39 -0.02 -0.52 16 32 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.04 1.45 7.11 -2.39 -0.02 1.43 16 35 H 0.08 2.52 7.68 -2.39 -0.02 2.50 16 Total: -1.00 -67.11 277.43 1.25 -65.86 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.98 Total: 5.90 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 4.33 Total: -20.27 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -4.48 Total: -87.06 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.46 Total: -10.92 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -67.11 1.25 -65.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381654608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.216 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds