Wall clock time and date at job start Sun Mar 29 2020 22:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.42907 * 113.99838 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.62772 * 31.64848 * 14 13 12 16 16 C 1.55133 * 110.70474 * 154.94597 * 14 13 12 17 17 C 1.54904 * 101.65332 * 154.03790 * 16 14 13 18 18 N 1.47845 * 104.79470 * 322.92820 * 17 16 14 19 19 C 1.47444 * 108.56810 * 24.09603 * 18 17 16 20 20 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 22 22 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 23 23 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 24 24 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 25 25 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 26 26 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 27 27 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 28 28 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 29 29 H 1.09004 * 110.99175 * 272.12390 * 16 14 13 30 30 H 1.08999 * 110.99506 * 35.94775 * 16 14 13 31 31 H 1.09007 * 110.37699 * 204.10161 * 17 16 14 32 32 H 1.09000 * 110.47353 * 81.80557 * 17 16 14 33 33 H 1.00903 * 111.00264 * 261.82951 * 18 17 16 34 34 H 1.09003 * 109.88925 * 239.60493 * 19 18 17 35 35 H 1.09003 * 110.02163 * 118.49204 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 8 1.7602 -7.3875 0.0018 14 6 2.6002 -8.5437 0.0018 15 1 3.5284 -8.3439 0.5371 16 6 1.8590 -9.7601 0.6163 17 6 2.5854 -10.9462 -0.0656 18 7 2.8585 -10.4806 -1.4420 19 6 2.8912 -9.0066 -1.4412 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8905 24 1 2.8720 -3.6042 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8541 -5.0445 0.8914 27 1 3.1014 -6.0927 -0.8882 28 1 3.1013 -6.0918 0.8917 29 1 1.9904 -9.7917 1.6980 30 1 0.8014 -9.7467 0.3532 31 1 1.9419 -11.8259 -0.0833 32 1 3.5185 -11.1699 0.4515 33 1 2.1626 -10.8265 -2.0855 34 1 2.1284 -8.6184 -2.1162 35 1 3.8750 -8.6549 -1.7522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385263506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:22 Heat of formation + Delta-G solvation = -70.378024 kcal Electronic energy + Delta-G solvation = -13796.312116 eV Core-core repulsion = 11407.228708 eV Total energy + Delta-G solvation = -2389.083408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.24593 -36.78296 -34.48804 -32.31911 -29.93284 -28.99309 -27.89189 -24.71301 -22.05404 -21.45307 -21.10773 -19.97306 -17.37659 -16.38366 -16.13790 -15.59235 -15.10450 -14.46467 -14.08878 -13.65504 -13.56151 -12.93368 -12.45601 -12.18406 -11.96126 -11.76001 -11.61185 -11.27020 -11.03955 -10.81321 -10.67204 -10.54780 -10.40147 -9.69058 -9.56736 -9.30756 -9.04969 -8.71808 -8.32722 -5.97854 -4.00464 3.34397 3.38591 3.40982 3.55739 4.08808 4.43212 4.47633 4.58808 4.89043 4.99502 5.23093 5.31689 5.35919 5.38152 5.49233 5.57508 5.64261 5.75431 5.80872 5.85842 6.10535 6.16407 6.47023 6.50917 6.77860 6.91476 7.02451 7.11420 7.36416 7.69901 7.85000 8.02581 8.44751 9.06638 9.63358 11.13515 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.094582 B = 0.003998 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.969722 B = 7001.042714 C = 7097.682383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.062 3.938 13 O -0.379 6.379 14 C 0.068 3.932 15 H 0.071 0.929 16 C -0.151 4.151 17 C 0.047 3.953 18 N -0.683 5.683 19 C 0.022 3.978 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.340 0.660 34 H 0.066 0.934 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 -19.151 -0.259 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.014 4.014 13 O -0.297 6.297 14 C 0.008 3.992 15 H 0.089 0.911 16 C -0.190 4.190 17 C -0.082 4.082 18 N -0.312 5.312 19 C -0.108 4.108 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.084 0.916 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.995 -19.117 -0.236 19.760 hybrid contribution -0.223 1.246 0.090 1.269 sum 4.772 -17.871 -0.145 18.498 Atomic orbital electron populations 1.69960 1.06062 1.26688 1.50823 1.25037 0.94858 0.99258 0.95364 0.86652 0.79571 0.83130 0.78599 1.20248 1.21286 1.20249 1.21238 0.92996 0.91159 1.50634 0.92761 1.19087 0.93992 0.91179 0.97323 1.21578 0.99195 0.93439 1.00326 1.21644 0.98081 0.92948 1.02722 1.22763 0.95438 0.83466 0.99752 1.87945 1.33519 1.13435 1.94845 1.23312 0.93928 0.86617 0.95318 0.91063 1.23173 1.00774 0.93942 1.01097 1.22844 0.99659 0.96595 0.89093 1.61696 1.53382 1.08459 1.07712 1.23165 1.02190 0.87853 0.97578 0.92952 0.96543 0.96537 0.93329 0.93301 0.91722 0.91721 0.93526 0.93523 0.90145 0.90255 0.91009 0.90290 0.84419 0.91570 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.25 5.15 -26.74 -0.14 -2.39 16 11 C -0.12 -2.09 5.58 -26.73 -0.15 -2.23 16 12 C 0.06 0.93 5.81 37.16 0.22 1.15 16 13 O -0.38 -5.62 10.07 -35.23 -0.35 -5.97 16 14 C 0.07 0.79 3.40 -24.91 -0.08 0.71 16 15 H 0.07 0.79 7.88 -51.93 -0.41 0.39 16 16 C -0.15 -1.47 6.80 -24.60 -0.17 -1.64 16 17 C 0.05 0.39 7.57 -2.30 -0.02 0.37 16 18 N -0.68 -6.55 7.39 -110.79 -0.82 -7.37 16 19 C 0.02 0.24 7.36 -2.84 -0.02 0.22 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.34 2.77 8.91 -39.29 -0.35 2.42 16 34 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 289.53 15.07 4.36 4.36 Total: -1.00 -30.87 289.53 -8.22 -39.09 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -6.21 Total: -3.09 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.91 Total: -17.24 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.08 Total: -34.02 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.35 Total: -5.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.87 -8.22 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385263506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.290 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds