Wall clock time and date at job start Sun Mar 29 2020 22:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.42907 * 113.99838 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.62772 * 31.64848 * 14 13 12 16 16 C 1.55133 * 110.70474 * 154.94597 * 14 13 12 17 17 C 1.54904 * 101.65332 * 154.03790 * 16 14 13 18 18 N 1.47845 * 104.79470 * 322.92820 * 17 16 14 19 19 C 1.47444 * 108.56810 * 24.09603 * 18 17 16 20 20 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 22 22 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 23 23 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 24 24 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 25 25 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 26 26 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 27 27 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 28 28 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 29 29 H 1.09004 * 110.99175 * 272.12390 * 16 14 13 30 30 H 1.08999 * 110.99506 * 35.94775 * 16 14 13 31 31 H 1.09007 * 110.37699 * 204.10161 * 17 16 14 32 32 H 1.09000 * 110.47353 * 81.80557 * 17 16 14 33 33 H 1.00903 * 111.00264 * 261.82951 * 18 17 16 34 34 H 1.09003 * 109.88925 * 239.60493 * 19 18 17 35 35 H 1.09003 * 110.02163 * 118.49204 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 8 1.7602 -7.3875 0.0018 14 6 2.6002 -8.5437 0.0018 15 1 3.5284 -8.3439 0.5371 16 6 1.8590 -9.7601 0.6163 17 6 2.5854 -10.9462 -0.0656 18 7 2.8585 -10.4806 -1.4420 19 6 2.8912 -9.0066 -1.4412 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8905 24 1 2.8720 -3.6042 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8541 -5.0445 0.8914 27 1 3.1014 -6.0927 -0.8882 28 1 3.1013 -6.0918 0.8917 29 1 1.9904 -9.7917 1.6980 30 1 0.8014 -9.7467 0.3532 31 1 1.9419 -11.8259 -0.0833 32 1 3.5185 -11.1699 0.4515 33 1 2.1626 -10.8265 -2.0855 34 1 2.1284 -8.6184 -2.1162 35 1 3.8750 -8.6549 -1.7522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385263506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:22 Heat of formation + Delta-G solvation = -91.381030 kcal Electronic energy + Delta-G solvation = -13797.222875 eV Core-core repulsion = 11407.228708 eV Total energy + Delta-G solvation = -2389.994166 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16211 -37.84743 -36.24807 -34.29334 -31.04282 -30.24032 -29.02486 -26.54638 -23.53093 -22.42338 -22.14823 -21.53805 -18.44955 -18.28877 -17.21994 -16.79243 -16.48394 -16.15322 -15.15507 -14.97080 -14.61961 -14.31391 -13.91919 -13.63392 -13.33310 -13.02246 -12.77486 -12.75703 -12.39031 -12.35734 -12.21604 -12.08732 -11.61273 -11.46543 -11.34501 -11.10035 -10.63634 -10.55490 -9.48857 -8.20435 -6.32376 1.39956 1.43550 1.51495 2.40048 2.55979 3.12399 3.32164 3.61813 3.80383 4.02564 4.05931 4.14549 4.28087 4.42163 4.48921 4.54877 4.60181 4.67592 4.82409 4.86578 4.87796 5.00986 5.13018 5.14708 5.24221 5.27343 5.51914 5.73890 5.76363 5.84709 6.22255 6.24255 6.41374 6.84925 7.37121 8.91493 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.094582 B = 0.003998 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.969722 B = 7001.042714 C = 7097.682383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.109 4.109 12 C 0.071 3.929 13 O -0.397 6.397 14 C 0.058 3.942 15 H 0.079 0.921 16 C -0.149 4.149 17 C 0.051 3.949 18 N -0.689 5.689 19 C 0.025 3.975 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.010 1.010 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.348 0.652 34 H 0.056 0.944 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 -19.782 -0.120 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.005 4.005 13 O -0.316 6.316 14 C -0.001 4.001 15 H 0.097 0.903 16 C -0.187 4.187 17 C -0.078 4.078 18 N -0.318 5.318 19 C -0.105 4.105 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.576 -19.775 -0.098 20.840 hybrid contribution -0.756 1.385 0.046 1.578 sum 5.820 -18.391 -0.053 19.290 Atomic orbital electron populations 1.70105 1.07929 1.27894 1.51636 1.26048 0.95806 1.03584 0.94669 0.85456 0.78226 0.77815 0.79283 1.19042 1.20863 1.19020 1.21712 0.93677 0.92369 1.50665 0.91905 1.19025 0.94532 0.93255 0.94754 1.21356 0.98042 0.92751 1.01073 1.21462 0.98305 0.93017 1.01928 1.22548 0.94331 0.82742 1.00900 1.87905 1.34640 1.14026 1.95064 1.23573 0.94205 0.86048 0.96234 0.90306 1.23191 1.00211 0.93580 1.01754 1.22904 1.00185 0.96579 0.88109 1.61705 1.53932 1.07513 1.08694 1.23086 1.01816 0.88749 0.96847 0.92745 0.99179 0.99153 0.92466 0.92476 0.92593 0.92555 0.92418 0.92286 0.89204 0.91091 0.89027 0.89671 0.83568 0.92505 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.16 4.97 29.84 0.15 1.31 16 10 C -0.09 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.11 -3.91 5.58 30.59 0.17 -3.74 16 12 C 0.07 2.03 5.81 71.98 0.42 2.45 16 13 O -0.40 -11.36 10.07 -148.98 -1.50 -12.86 16 14 C 0.06 1.27 3.40 31.77 0.11 1.38 16 15 H 0.08 1.60 7.88 -2.39 -0.02 1.58 16 16 C -0.15 -2.63 6.80 31.98 0.22 -2.41 16 17 C 0.05 0.73 7.57 86.77 0.66 1.38 16 18 N -0.69 -11.90 7.39 -504.42 -3.73 -15.63 16 19 C 0.03 0.51 7.36 86.65 0.64 1.15 16 20 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 21 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 22 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 23 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.55 8.11 -2.39 -0.02 1.53 16 29 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.35 5.06 8.91 -89.69 -0.80 4.27 16 34 H 0.06 1.25 8.06 -2.39 -0.02 1.23 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -65.85 289.53 0.53 -65.32 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.24 Total: 7.81 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.21 Total: -33.47 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -3.44 Total: -73.50 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.50 Total: -12.86 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.85 0.53 -65.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385263506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.061 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds