Wall clock time and date at job start Sun Mar 29 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48492 * 109.47164 * 89.99958 * 3 2 1 5 5 H 1.48497 * 109.47295 * 210.00379 * 3 2 1 6 6 H 1.48510 * 109.46857 * 330.00218 * 3 2 1 7 7 C 1.37881 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99802 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47166 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47441 * 186.14366 * 10 9 7 12 12 C 1.47900 * 111.00132 * 77.74029 * 11 10 9 13 13 C 1.53991 * 107.05953 * 214.15817 * 12 11 10 14 14 C 1.54587 * 105.14093 * 1.22611 * 13 12 11 15 15 C 1.48538 * 110.99806 * 320.34958 * 11 10 9 16 16 H 1.08998 * 110.66723 * 41.28084 * 15 11 10 17 17 C 1.53001 * 110.66382 * 278.15294 * 15 11 10 18 18 C 1.53003 * 109.47001 * 67.20338 * 17 15 11 19 19 O 1.42902 * 109.47018 * 173.86793 * 18 17 15 20 20 H 0.97004 * 120.00501 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46962 * 300.00324 * 9 7 2 22 22 H 1.09004 * 109.47422 * 59.99492 * 9 7 2 23 23 H 1.09001 * 109.47232 * 306.13905 * 10 9 7 24 24 H 1.09003 * 109.47601 * 66.14118 * 10 9 7 25 25 H 1.09000 * 109.91915 * 333.50981 * 12 11 10 26 26 H 1.09001 * 109.91484 * 94.60716 * 12 11 10 27 27 H 1.09004 * 110.30877 * 120.14247 * 13 12 11 28 28 H 1.09006 * 110.31235 * 242.20567 * 13 12 11 29 29 H 1.09006 * 110.72773 * 140.31684 * 14 13 12 30 30 H 1.08994 * 110.72651 * 263.41810 * 14 13 12 31 31 H 1.08995 * 109.47041 * 187.19914 * 17 15 11 32 32 H 1.08994 * 109.47072 * 307.20127 * 17 15 11 33 33 H 1.09004 * 109.47027 * 293.86140 * 18 17 15 34 34 H 1.08995 * 109.47179 * 53.86796 * 18 17 15 35 35 H 0.96694 * 113.99988 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5466 1.4402 -0.7001 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4831 -2.6393 0.1454 12 6 5.8743 -2.3963 1.5508 13 6 7.1846 -1.5878 1.5217 14 6 7.4881 -1.3646 0.0225 15 6 6.0997 -1.5411 -0.6421 16 1 5.5119 -0.6274 -0.5539 17 6 6.2511 -1.9479 -2.1093 18 6 4.8665 -2.0900 -2.7446 19 8 5.0078 -2.3293 -4.1463 20 1 -0.4851 0.8400 0.0004 21 1 3.8744 -0.6799 -0.8911 22 1 3.8752 -0.6803 0.8888 23 1 3.5716 -3.1816 0.8275 24 1 3.7504 -3.1171 -0.9423 25 1 5.0971 -1.8257 2.0593 26 1 6.0318 -3.3461 2.0619 27 1 7.0502 -0.6313 2.0270 28 1 7.9889 -2.1536 1.9920 29 1 7.8722 -0.3588 -0.1478 30 1 8.1920 -2.1118 -0.3440 31 1 6.8183 -1.1843 -2.6414 32 1 6.7780 -2.9001 -2.1698 33 1 4.3397 -2.9261 -2.2846 34 1 4.2990 -1.1726 -2.5880 35 1 4.1680 -2.4295 -4.6149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388170241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:57 Heat of formation + Delta-G solvation = -50.072346 kcal Electronic energy + Delta-G solvation = -15182.132276 eV Core-core repulsion = 12793.929388 eV Total energy + Delta-G solvation = -2388.202888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34007 -36.36894 -33.74030 -32.03590 -31.79211 -28.86392 -26.85047 -24.60631 -22.30606 -21.43953 -20.59271 -18.80707 -17.16815 -16.92687 -15.82259 -14.87778 -14.70816 -14.32334 -13.82118 -13.53991 -13.25506 -12.81658 -12.52579 -11.98152 -11.82503 -11.56720 -11.10735 -11.04860 -10.96983 -10.79893 -10.47958 -10.41380 -10.18118 -10.09348 -9.86289 -9.28163 -9.07411 -8.59555 -7.75190 -6.12674 -4.11158 3.22336 3.30886 3.32230 4.36378 4.43811 4.50540 4.95040 5.05707 5.20110 5.23348 5.46953 5.59977 5.68460 5.78425 5.84918 5.93687 6.02294 6.05246 6.08937 6.21984 6.25229 6.31666 6.38130 6.46577 6.59722 6.71648 7.09721 7.18424 7.48338 7.49283 7.78455 7.95379 8.44860 8.92127 9.49628 11.00550 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.011566 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.763957 B = 2420.302692 C = 2931.717965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.286 1.286 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.046 4.046 10 C 0.045 3.955 11 N -0.518 5.518 12 C 0.033 3.967 13 C -0.130 4.130 14 C -0.117 4.117 15 C 0.052 3.948 16 H 0.074 0.926 17 C -0.096 4.096 18 C 0.060 3.940 19 O -0.585 6.585 20 H 0.264 0.736 21 H 0.026 0.974 22 H 0.010 0.990 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 -2.322 -1.034 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.212 1.212 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.084 4.084 10 C -0.082 4.082 11 N -0.241 5.241 12 C -0.095 4.095 13 C -0.168 4.168 14 C -0.155 4.155 15 C -0.056 4.056 16 H 0.092 0.908 17 C -0.134 4.134 18 C -0.017 4.017 19 O -0.391 6.391 20 H 0.073 0.927 21 H 0.043 0.957 22 H 0.028 0.972 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 13.369 -2.689 -1.044 13.677 hybrid contribution -0.738 1.756 0.307 1.929 sum 12.631 -0.933 -0.737 12.687 Atomic orbital electron populations 1.69904 1.06244 1.26924 1.50831 1.25017 0.94687 0.99028 0.94518 0.86842 0.80353 0.83935 0.78546 1.20307 1.19177 1.21227 1.21034 0.89151 0.94494 1.51071 0.90910 1.20239 0.97868 0.93895 0.96390 1.22531 0.84953 0.98688 1.01986 1.65025 1.10845 1.42310 1.05965 1.22810 0.96097 0.99308 0.91330 1.22367 0.97693 0.99962 0.96769 1.22476 0.96871 1.01240 0.94945 1.22925 0.94766 0.94956 0.92989 0.90845 1.21329 0.96548 1.02081 0.93415 1.22772 0.97649 1.01061 0.80183 1.86356 1.35494 1.95522 1.21695 0.92664 0.95658 0.97230 0.91593 0.90464 0.93103 0.90996 0.91877 0.91497 0.91607 0.91026 0.91634 0.91082 0.91705 0.92854 0.77662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.05 -1.05 2.55 -27.89 -0.07 -1.13 16 10 C 0.05 0.90 4.60 -3.83 -0.02 0.88 16 11 N -0.52 -8.96 5.22 -222.63 -1.16 -10.13 16 12 C 0.03 0.51 6.39 -2.76 -0.02 0.50 16 13 C -0.13 -1.72 6.93 -25.38 -0.18 -1.89 16 14 C -0.12 -1.59 6.50 -24.88 -0.16 -1.75 16 15 C 0.05 0.85 2.21 -65.78 -0.15 0.71 16 16 H 0.07 1.38 5.31 -51.93 -0.28 1.11 16 17 C -0.10 -1.52 5.33 -26.73 -0.14 -1.66 16 18 C 0.06 1.02 5.81 37.16 0.22 1.24 16 19 O -0.59 -9.32 13.66 -35.23 -0.48 -9.80 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.03 0.59 3.32 -51.93 -0.17 0.42 16 22 H 0.01 0.23 6.38 -51.93 -0.33 -0.11 16 23 H 0.07 1.34 7.97 -51.93 -0.41 0.92 16 24 H 0.08 1.52 5.15 -51.93 -0.27 1.26 16 25 H 0.05 0.88 6.70 -51.93 -0.35 0.53 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.14 5.00 -51.93 -0.26 0.88 16 34 H 0.05 1.00 6.32 -51.93 -0.33 0.67 16 35 H 0.38 4.49 9.12 45.56 0.42 4.90 16 LS Contribution 264.97 15.07 3.99 3.99 Total: -1.00 -30.48 264.97 -7.01 -37.50 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.52 Total: 4.13 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.95 Total: -15.94 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.39 Total: -36.71 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.48 Total: -9.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.48 -7.01 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.577 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds