Wall clock time and date at job start Sun Mar 29 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48492 * 109.47164 * 89.99958 * 3 2 1 5 5 H 1.48497 * 109.47295 * 210.00379 * 3 2 1 6 6 H 1.48510 * 109.46857 * 330.00218 * 3 2 1 7 7 C 1.37881 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99802 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47166 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47441 * 186.14366 * 10 9 7 12 12 C 1.47900 * 111.00132 * 77.74029 * 11 10 9 13 13 C 1.53991 * 107.05953 * 214.15817 * 12 11 10 14 14 C 1.54587 * 105.14093 * 1.22611 * 13 12 11 15 15 C 1.48538 * 110.99806 * 320.34958 * 11 10 9 16 16 H 1.08998 * 110.66723 * 41.28084 * 15 11 10 17 17 C 1.53001 * 110.66382 * 278.15294 * 15 11 10 18 18 C 1.53003 * 109.47001 * 67.20338 * 17 15 11 19 19 O 1.42902 * 109.47018 * 173.86793 * 18 17 15 20 20 H 0.97004 * 120.00501 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46962 * 300.00324 * 9 7 2 22 22 H 1.09004 * 109.47422 * 59.99492 * 9 7 2 23 23 H 1.09001 * 109.47232 * 306.13905 * 10 9 7 24 24 H 1.09003 * 109.47601 * 66.14118 * 10 9 7 25 25 H 1.09000 * 109.91915 * 333.50981 * 12 11 10 26 26 H 1.09001 * 109.91484 * 94.60716 * 12 11 10 27 27 H 1.09004 * 110.30877 * 120.14247 * 13 12 11 28 28 H 1.09006 * 110.31235 * 242.20567 * 13 12 11 29 29 H 1.09006 * 110.72773 * 140.31684 * 14 13 12 30 30 H 1.08994 * 110.72651 * 263.41810 * 14 13 12 31 31 H 1.08995 * 109.47041 * 187.19914 * 17 15 11 32 32 H 1.08994 * 109.47072 * 307.20127 * 17 15 11 33 33 H 1.09004 * 109.47027 * 293.86140 * 18 17 15 34 34 H 1.08995 * 109.47179 * 53.86796 * 18 17 15 35 35 H 0.96694 * 113.99988 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5466 1.4402 -0.7001 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4831 -2.6393 0.1454 12 6 5.8743 -2.3963 1.5508 13 6 7.1846 -1.5878 1.5217 14 6 7.4881 -1.3646 0.0225 15 6 6.0997 -1.5411 -0.6421 16 1 5.5119 -0.6274 -0.5539 17 6 6.2511 -1.9479 -2.1093 18 6 4.8665 -2.0900 -2.7446 19 8 5.0078 -2.3293 -4.1463 20 1 -0.4851 0.8400 0.0004 21 1 3.8744 -0.6799 -0.8911 22 1 3.8752 -0.6803 0.8888 23 1 3.5716 -3.1816 0.8275 24 1 3.7504 -3.1171 -0.9423 25 1 5.0971 -1.8257 2.0593 26 1 6.0318 -3.3461 2.0619 27 1 7.0502 -0.6313 2.0270 28 1 7.9889 -2.1536 1.9920 29 1 7.8722 -0.3588 -0.1478 30 1 8.1920 -2.1118 -0.3440 31 1 6.8183 -1.1843 -2.6414 32 1 6.7780 -2.9001 -2.1698 33 1 4.3397 -2.9261 -2.2846 34 1 4.2990 -1.1726 -2.5880 35 1 4.1680 -2.4295 -4.6149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388170241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:57 Heat of formation + Delta-G solvation = -73.691546 kcal Electronic energy + Delta-G solvation = -15183.156481 eV Core-core repulsion = 12793.929388 eV Total energy + Delta-G solvation = -2389.227093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67709 -37.64370 -35.57346 -33.81329 -33.07975 -30.58155 -28.08353 -26.32479 -23.89658 -22.95984 -21.73039 -20.27595 -19.16279 -18.25564 -17.27397 -16.39206 -16.07311 -16.05333 -15.21409 -14.93916 -14.77092 -14.66269 -13.90777 -13.69616 -13.24362 -13.00561 -12.63785 -12.49940 -12.30244 -12.16633 -12.00933 -11.90393 -11.76209 -11.55256 -11.48723 -11.11471 -10.85833 -10.49148 -9.20959 -8.34495 -6.38152 1.27910 1.29732 1.40239 2.28732 3.00199 3.12045 3.29972 3.77318 3.89118 4.12853 4.14303 4.27970 4.36402 4.46945 4.54748 4.56759 4.68399 4.76632 4.86442 4.92197 5.02045 5.04298 5.09270 5.17063 5.26603 5.29960 5.42831 5.49447 5.57779 6.06768 6.09113 6.29102 6.70103 6.83852 7.26136 8.81974 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.011566 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.763957 B = 2420.302692 C = 2931.717965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.250 1.250 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.035 0.965 9 C -0.033 4.033 10 C 0.056 3.944 11 N -0.515 5.515 12 C 0.026 3.974 13 C -0.124 4.124 14 C -0.111 4.111 15 C 0.046 3.954 16 H 0.050 0.950 17 C -0.091 4.091 18 C 0.064 3.936 19 O -0.590 6.590 20 H 0.266 0.734 21 H 0.031 0.969 22 H 0.008 0.992 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.486 -1.644 -1.071 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.173 1.173 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.053 0.947 9 C -0.071 4.071 10 C -0.072 4.072 11 N -0.238 5.238 12 C -0.102 4.102 13 C -0.162 4.162 14 C -0.149 4.149 15 C -0.062 4.062 16 H 0.067 0.933 17 C -0.129 4.129 18 C -0.013 4.013 19 O -0.398 6.398 20 H 0.075 0.925 21 H 0.049 0.951 22 H 0.026 0.974 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 16.149 -2.027 -1.088 16.312 hybrid contribution -1.660 1.447 0.298 2.222 sum 14.489 -0.580 -0.790 14.522 Atomic orbital electron populations 1.70050 1.08128 1.28098 1.52470 1.25917 0.95496 1.03082 0.94204 0.85790 0.79579 0.78999 0.79128 1.19375 1.17335 1.20750 1.21354 0.91702 0.93117 1.50342 0.94695 1.20107 0.94519 0.96175 0.96294 1.22301 0.86968 0.96377 1.01508 1.65059 1.08497 1.42900 1.07358 1.22944 0.96956 1.00283 0.90055 1.22376 0.96808 1.00089 0.96971 1.22494 0.95038 1.02801 0.94524 1.22997 0.96295 0.93367 0.93558 0.93252 1.21314 0.95752 1.02774 0.93021 1.22642 0.98263 0.99467 0.80896 1.86323 1.36997 1.95373 1.21124 0.92463 0.95095 0.97413 0.92726 0.90620 0.95226 0.89670 0.91476 0.88943 0.89930 0.89555 0.90424 0.90451 0.92767 0.94994 0.75816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 2 C 0.01 0.60 5.47 84.66 0.46 1.07 16 3 Si 0.94 44.18 27.47 68.60 1.88 46.07 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.53 -30.00 9.66 25.60 0.25 -29.76 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 9 C -0.03 -1.51 2.55 29.85 0.08 -1.43 16 10 C 0.06 2.24 4.60 86.30 0.40 2.64 16 11 N -0.51 -17.06 5.22 -858.27 -4.48 -21.54 16 12 C 0.03 0.75 6.39 86.45 0.55 1.31 16 13 C -0.12 -2.85 6.93 31.47 0.22 -2.63 16 14 C -0.11 -2.57 6.50 31.80 0.21 -2.36 16 15 C 0.05 1.41 2.21 45.26 0.10 1.51 16 16 H 0.05 1.77 5.31 -2.39 -0.01 1.75 16 17 C -0.09 -2.67 5.33 30.60 0.16 -2.51 16 18 C 0.06 2.13 5.81 71.98 0.42 2.55 16 19 O -0.59 -17.92 13.66 -148.98 -2.04 -19.95 16 20 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 21 H 0.03 1.41 3.32 -2.39 -0.01 1.41 16 22 H 0.01 0.36 6.38 -2.39 -0.02 0.34 16 23 H 0.05 2.26 7.97 -2.39 -0.02 2.24 16 24 H 0.08 3.03 5.15 -2.39 -0.01 3.02 16 25 H 0.03 0.99 6.70 -2.39 -0.02 0.97 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 1.79 8.06 -2.39 -0.02 1.77 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 1.90 5.00 -2.38 -0.01 1.89 16 34 H 0.03 1.18 6.32 -2.39 -0.02 1.17 16 35 H 0.39 8.89 9.12 -74.06 -0.68 8.21 16 Total: -1.00 -65.67 264.97 -1.14 -66.81 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.35 Total: 16.95 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 2.84 Total: -29.62 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -4.18 Total: -80.25 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -2.04 Total: -19.95 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -65.67 -1.14 -66.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.880 kcal (2) G-P(sol) polarization free energy of solvation -65.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds