Wall clock time and date at job start Sun Mar 29 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00400 * 2 1 4 4 H 1.48498 * 109.47379 * 89.99641 * 3 2 1 5 5 H 1.48504 * 109.47198 * 209.99621 * 3 2 1 6 6 H 1.48495 * 109.47018 * 329.99448 * 3 2 1 7 7 C 1.37878 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00157 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46898 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.46707 * 180.02562 * 10 9 7 12 12 C 1.47849 * 111.00341 * 295.97290 * 11 10 9 13 13 C 1.54906 * 104.79910 * 213.64160 * 12 11 10 14 14 C 1.55136 * 101.65136 * 37.06667 * 13 12 11 15 15 C 1.47441 * 110.99803 * 175.13348 * 11 10 9 16 16 H 1.09005 * 109.89175 * 242.65973 * 15 11 10 17 17 C 1.52999 * 109.89030 * 3.68865 * 15 11 10 18 18 C 1.53001 * 109.47115 * 182.47156 * 17 15 11 19 19 O 1.42904 * 109.46952 * 174.90621 * 18 17 15 20 20 H 0.96993 * 120.00281 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47426 * 299.99780 * 9 7 2 22 22 H 1.09002 * 109.47077 * 60.00086 * 9 7 2 23 23 H 1.09004 * 109.47003 * 299.99817 * 10 9 7 24 24 H 1.08995 * 109.47401 * 60.00015 * 10 9 7 25 25 H 1.09000 * 110.36897 * 332.47433 * 12 11 10 26 26 H 1.08999 * 110.36949 * 94.80932 * 12 11 10 27 27 H 1.09007 * 110.98794 * 278.97788 * 13 12 11 28 28 H 1.08996 * 110.99136 * 155.16286 * 13 12 11 29 29 H 1.09006 * 110.70575 * 205.96517 * 14 13 12 30 30 H 1.08997 * 110.70629 * 82.73638 * 14 13 12 31 31 H 1.09000 * 109.46765 * 302.46685 * 17 15 11 32 32 H 1.08993 * 109.47392 * 62.46951 * 17 15 11 33 33 H 1.08999 * 109.47147 * 294.89501 * 18 17 15 34 34 H 1.08992 * 109.47450 * 54.90268 * 18 17 15 35 35 H 0.96701 * 114.00259 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5469 1.4400 -0.7000 6 1 1.4468 2.6526 -0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5105 -4.9343 -0.0001 12 6 0.7216 -5.0912 1.2405 13 6 0.7438 -6.6121 1.5337 14 6 2.1832 -6.9940 1.0992 15 6 2.4340 -6.0776 -0.1169 16 1 2.2344 -6.6229 -1.0394 17 6 3.8811 -5.5809 -0.1089 18 6 4.8288 -6.7679 -0.2923 19 8 6.1718 -6.2924 -0.4037 20 1 -0.4850 -0.8400 -0.0004 21 1 0.6239 -2.5568 0.8903 22 1 0.6245 -2.5571 -0.8897 23 1 2.8717 -3.6045 -0.8895 24 1 2.8717 -3.6045 0.8905 25 1 1.1865 -4.5403 2.0580 26 1 -0.3018 -4.7496 1.0851 27 1 0.0020 -7.1367 0.9314 28 1 0.5915 -6.8074 2.5952 29 1 2.2323 -8.0432 0.8077 30 1 2.8957 -6.7807 1.8960 31 1 4.0260 -4.8711 -0.9233 32 1 4.0919 -5.0912 0.8417 33 1 4.7491 -7.4327 0.5677 34 1 4.5595 -7.3113 -1.1979 35 1 6.8283 -6.9923 -0.5228 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388170246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:00 Heat of formation + Delta-G solvation = -63.217672 kcal Electronic energy + Delta-G solvation = -14667.302114 eV Core-core repulsion = 12278.529202 eV Total energy + Delta-G solvation = -2388.772912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.39012 -36.79836 -33.92842 -32.11293 -31.79915 -28.18037 -26.83927 -23.96747 -22.91725 -21.76573 -20.62746 -18.78299 -17.33318 -16.78447 -15.87876 -15.24180 -15.02355 -14.30940 -13.80001 -13.65978 -13.22452 -12.84951 -12.59747 -12.02349 -11.86797 -11.51980 -11.22015 -10.95950 -10.80399 -10.75130 -10.59343 -10.53646 -10.11490 -10.07896 -9.85409 -9.55454 -8.51380 -8.26360 -7.75225 -6.30844 -3.99034 3.46892 3.51126 3.66931 4.09717 4.43944 4.61365 4.77909 4.94062 5.01177 5.18271 5.19886 5.39936 5.47211 5.56298 5.61562 5.69204 5.84501 5.93898 5.98806 6.12375 6.19836 6.26043 6.36198 6.40300 6.55601 6.89764 7.34416 7.43237 7.55365 7.66189 7.76716 8.30620 8.53047 8.94881 9.73316 11.10408 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.007611 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.351476 B = 3677.880268 C = 4459.616641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.048 0.952 9 C 0.014 3.986 10 C 0.062 3.938 11 N -0.526 5.526 12 C 0.046 3.954 13 C -0.130 4.130 14 C -0.139 4.139 15 C 0.076 3.924 16 H 0.080 0.920 17 C -0.139 4.139 18 C 0.079 3.921 19 O -0.574 6.574 20 H 0.269 0.731 21 H 0.006 0.994 22 H 0.014 0.986 23 H 0.067 0.933 24 H 0.025 0.975 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.401 -15.596 1.644 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.024 4.024 10 C -0.065 4.065 11 N -0.250 5.250 12 C -0.082 4.082 13 C -0.168 4.168 14 C -0.177 4.177 15 C -0.033 4.033 16 H 0.098 0.902 17 C -0.177 4.177 18 C 0.001 3.999 19 O -0.379 6.379 20 H 0.080 0.920 21 H 0.024 0.976 22 H 0.033 0.967 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.566 -13.342 1.276 14.513 hybrid contribution 1.043 -2.242 0.654 2.558 sum 6.609 -15.584 1.930 17.038 Atomic orbital electron populations 1.70733 1.06869 1.30682 1.46767 1.25822 0.96561 1.02628 0.93843 0.83520 0.74703 0.75138 0.76685 1.21536 1.21477 1.20973 1.22053 0.94275 0.92068 1.55696 0.93411 1.19232 0.94666 0.92086 0.96400 1.22433 0.96629 0.88051 0.99367 1.63855 1.23134 1.02281 1.35711 1.23004 0.99366 0.94594 0.91217 1.22714 0.96621 0.96673 1.00820 1.22909 0.97314 0.99476 0.98014 1.22361 0.90139 0.92597 0.98202 0.90220 1.22174 0.93570 0.97923 1.04042 1.22193 0.82128 0.96398 0.99177 1.86539 1.16996 1.37874 1.96457 0.92014 0.97565 0.96740 0.91486 0.95649 0.93616 0.90381 0.90944 0.91279 0.91297 0.91557 0.89841 0.91048 0.93919 0.93766 0.77896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.83 13.65 55.43 0.76 -28.07 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 26.14 29.90 -169.99 -5.08 21.06 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.60 -17.83 9.11 -34.44 -0.31 -18.14 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.01 0.36 4.25 -27.88 -0.12 0.25 16 10 C 0.06 1.37 3.61 -3.82 -0.01 1.36 16 11 N -0.53 -9.89 5.20 -223.35 -1.16 -11.05 16 12 C 0.05 0.79 5.53 -2.30 -0.01 0.78 16 13 C -0.13 -1.70 7.08 -24.60 -0.17 -1.87 16 14 C -0.14 -1.72 5.59 -24.91 -0.14 -1.86 16 15 C 0.08 1.13 3.48 -66.73 -0.23 0.90 16 16 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.14 -2.10 3.73 -26.73 -0.10 -2.20 16 18 C 0.08 0.94 6.78 37.16 0.25 1.20 16 19 O -0.57 -7.27 13.66 -35.23 -0.48 -7.76 16 20 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 21 H 0.01 0.17 7.18 -51.93 -0.37 -0.20 16 22 H 0.01 0.41 8.01 -51.93 -0.42 0.00 16 23 H 0.07 1.50 6.32 -51.93 -0.33 1.17 16 24 H 0.03 0.57 6.75 -51.93 -0.35 0.22 16 25 H 0.05 0.84 7.71 -51.93 -0.40 0.44 16 26 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.82 7.79 -51.93 -0.40 0.41 16 31 H 0.08 1.44 6.30 -51.93 -0.33 1.11 16 32 H 0.07 1.19 6.95 -51.93 -0.36 0.83 16 33 H 0.04 0.44 7.54 -51.93 -0.39 0.05 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.37 2.73 9.12 45.56 0.42 3.14 16 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -33.10 275.84 -7.73 -40.84 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.97 Total: 0.06 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.95 Total: -19.24 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: -0.41 Total: -39.12 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.48 Total: -7.76 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.10 -7.73 -40.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.382 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds