Wall clock time and date at job start Sun Mar 29 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00400 * 2 1 4 4 H 1.48498 * 109.47379 * 89.99641 * 3 2 1 5 5 H 1.48504 * 109.47198 * 209.99621 * 3 2 1 6 6 H 1.48495 * 109.47018 * 329.99448 * 3 2 1 7 7 C 1.37878 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00157 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46898 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.46707 * 180.02562 * 10 9 7 12 12 C 1.47849 * 111.00341 * 295.97290 * 11 10 9 13 13 C 1.54906 * 104.79910 * 213.64160 * 12 11 10 14 14 C 1.55136 * 101.65136 * 37.06667 * 13 12 11 15 15 C 1.47441 * 110.99803 * 175.13348 * 11 10 9 16 16 H 1.09005 * 109.89175 * 242.65973 * 15 11 10 17 17 C 1.52999 * 109.89030 * 3.68865 * 15 11 10 18 18 C 1.53001 * 109.47115 * 182.47156 * 17 15 11 19 19 O 1.42904 * 109.46952 * 174.90621 * 18 17 15 20 20 H 0.96993 * 120.00281 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47426 * 299.99780 * 9 7 2 22 22 H 1.09002 * 109.47077 * 60.00086 * 9 7 2 23 23 H 1.09004 * 109.47003 * 299.99817 * 10 9 7 24 24 H 1.08995 * 109.47401 * 60.00015 * 10 9 7 25 25 H 1.09000 * 110.36897 * 332.47433 * 12 11 10 26 26 H 1.08999 * 110.36949 * 94.80932 * 12 11 10 27 27 H 1.09007 * 110.98794 * 278.97788 * 13 12 11 28 28 H 1.08996 * 110.99136 * 155.16286 * 13 12 11 29 29 H 1.09006 * 110.70575 * 205.96517 * 14 13 12 30 30 H 1.08997 * 110.70629 * 82.73638 * 14 13 12 31 31 H 1.09000 * 109.46765 * 302.46685 * 17 15 11 32 32 H 1.08993 * 109.47392 * 62.46951 * 17 15 11 33 33 H 1.08999 * 109.47147 * 294.89501 * 18 17 15 34 34 H 1.08992 * 109.47450 * 54.90268 * 18 17 15 35 35 H 0.96701 * 114.00259 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5469 1.4400 -0.7000 6 1 1.4468 2.6526 -0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5105 -4.9343 -0.0001 12 6 0.7216 -5.0912 1.2405 13 6 0.7438 -6.6121 1.5337 14 6 2.1832 -6.9940 1.0992 15 6 2.4340 -6.0776 -0.1169 16 1 2.2344 -6.6229 -1.0394 17 6 3.8811 -5.5809 -0.1089 18 6 4.8288 -6.7679 -0.2923 19 8 6.1718 -6.2924 -0.4037 20 1 -0.4850 -0.8400 -0.0004 21 1 0.6239 -2.5568 0.8903 22 1 0.6245 -2.5571 -0.8897 23 1 2.8717 -3.6045 -0.8895 24 1 2.8717 -3.6045 0.8905 25 1 1.1865 -4.5403 2.0580 26 1 -0.3018 -4.7496 1.0851 27 1 0.0020 -7.1367 0.9314 28 1 0.5915 -6.8074 2.5952 29 1 2.2323 -8.0432 0.8077 30 1 2.8957 -6.7807 1.8960 31 1 4.0260 -4.8711 -0.9233 32 1 4.0919 -5.0912 0.8417 33 1 4.7491 -7.4327 0.5677 34 1 4.5595 -7.3113 -1.1979 35 1 6.8283 -6.9923 -0.5228 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388170246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:00 Heat of formation + Delta-G solvation = -88.916904 kcal Electronic energy + Delta-G solvation = -14668.416516 eV Core-core repulsion = 12278.529202 eV Total energy + Delta-G solvation = -2389.887314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71556 -37.77831 -36.01629 -33.59726 -33.24756 -30.02639 -27.98551 -26.03875 -24.09916 -23.50206 -21.91162 -20.18037 -18.98826 -18.29819 -17.19186 -16.60612 -16.15133 -15.82558 -15.66741 -15.15637 -14.76579 -14.32517 -14.01799 -13.67256 -13.32470 -13.06884 -12.90400 -12.56221 -12.10508 -12.00599 -11.96430 -11.91449 -11.78228 -11.63220 -11.47462 -10.88268 -10.74864 -10.57210 -9.26740 -8.73916 -6.43853 1.49257 1.59292 1.77662 2.53028 2.97605 3.12227 3.29118 3.63612 3.74997 3.97356 4.10778 4.21089 4.29291 4.33874 4.41101 4.50641 4.53117 4.60174 4.77345 4.83416 4.90040 4.96567 5.01348 5.11008 5.16126 5.23144 5.35590 5.39786 5.84246 6.12080 6.12560 6.18027 6.53638 6.91534 7.38838 8.67204 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.007611 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.351476 B = 3677.880268 C = 4459.616641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.122 2.878 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.279 1.279 7 C -0.623 4.623 8 H 0.047 0.953 9 C 0.019 3.981 10 C 0.085 3.915 11 N -0.542 5.542 12 C 0.038 3.962 13 C -0.118 4.118 14 C -0.128 4.128 15 C 0.073 3.927 16 H 0.094 0.906 17 C -0.136 4.136 18 C 0.085 3.915 19 O -0.600 6.600 20 H 0.255 0.745 21 H -0.011 1.011 22 H -0.013 1.013 23 H 0.060 0.940 24 H 0.018 0.982 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -17.274 1.952 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.235 4.235 3 Si 0.942 3.058 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.204 1.204 7 C -0.661 4.661 8 H 0.066 0.934 9 C -0.018 4.018 10 C -0.043 4.043 11 N -0.266 5.266 12 C -0.090 4.090 13 C -0.156 4.156 14 C -0.166 4.166 15 C -0.035 4.035 16 H 0.112 0.888 17 C -0.175 4.175 18 C 0.008 3.992 19 O -0.409 6.409 20 H 0.064 0.936 21 H 0.007 0.993 22 H 0.006 0.994 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.853 -15.075 1.586 16.635 hybrid contribution 0.631 -1.766 0.538 1.951 sum 7.484 -16.841 2.124 18.551 Atomic orbital electron populations 1.70875 1.07898 1.29825 1.48584 1.27508 0.96611 1.06872 0.92489 0.82896 0.74139 0.70825 0.77953 1.19561 1.19477 1.20393 1.22465 0.94560 0.93507 1.55549 0.93416 1.19109 0.94924 0.93644 0.94132 1.21990 0.95063 0.88528 0.98684 1.63737 1.24069 1.02022 1.36794 1.23045 0.97853 0.98087 0.89978 1.22693 0.97642 0.92757 1.02509 1.22896 0.96537 1.00694 0.96514 1.22504 0.89081 0.91548 1.00388 0.88842 1.22071 0.94916 0.98906 1.01596 1.22126 0.81189 0.94751 1.01179 1.86473 1.17886 1.39954 1.96613 0.93604 0.99291 0.99440 0.92115 0.96341 0.95484 0.92148 0.89675 0.89123 0.87624 0.91320 0.92825 0.93231 0.91469 0.91816 0.75165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.47 13.65 21.45 0.29 -60.17 16 2 C -0.04 -2.28 5.46 84.65 0.46 -1.81 16 3 Si 1.12 52.40 29.90 68.60 2.05 54.45 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.62 -37.90 9.11 25.60 0.23 -37.67 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.02 1.09 4.25 29.85 0.13 1.22 16 10 C 0.09 3.92 3.61 86.31 0.31 4.23 16 11 N -0.54 -20.63 5.20 -860.54 -4.48 -25.10 16 12 C 0.04 1.33 5.53 86.77 0.48 1.81 16 13 C -0.12 -2.78 7.08 31.98 0.23 -2.55 16 14 C -0.13 -2.73 5.59 31.77 0.18 -2.55 16 15 C 0.07 2.06 3.48 45.26 0.16 2.21 16 16 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 17 C -0.14 -4.04 3.73 30.59 0.11 -3.92 16 18 C 0.09 1.80 6.78 71.98 0.49 2.29 16 19 O -0.60 -13.99 13.66 -148.98 -2.04 -16.03 16 20 H 0.25 16.79 7.22 -92.71 -0.67 16.12 16 21 H -0.01 -0.66 7.18 -2.39 -0.02 -0.68 16 22 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 23 H 0.06 2.84 6.32 -2.38 -0.02 2.82 16 24 H 0.02 0.86 6.75 -2.39 -0.02 0.85 16 25 H 0.03 1.02 7.71 -2.39 -0.02 1.00 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.07 1.46 7.79 -2.39 -0.02 1.44 16 31 H 0.05 1.88 6.30 -2.39 -0.02 1.86 16 32 H 0.05 1.65 6.95 -2.39 -0.02 1.63 16 33 H 0.07 1.11 7.54 -2.39 -0.02 1.09 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.40 4.74 9.12 -74.06 -0.68 4.06 16 Total: -1.00 -73.73 275.84 -0.91 -74.64 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.48 Total: 8.96 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 2.78 Total: -36.75 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -4.18 Total: -85.28 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -2.04 Total: -16.03 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.45 kcal Total: -73.73 -0.91 -74.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388170246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.275 kcal (2) G-P(sol) polarization free energy of solvation -73.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds