Wall clock time and date at job start Sun Mar 29 2020 22:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46771 * 2 1 4 4 C 1.42905 * 113.99935 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.56030 * 4.31111 * 4 3 2 6 6 C 1.53071 * 117.49334 * 218.59713 * 4 3 2 7 7 C 1.53001 * 59.98492 * 252.51761 * 6 4 3 8 8 H 1.08996 * 117.49586 * 107.50854 * 7 6 4 9 9 C 1.50699 * 117.49518 * 252.49923 * 7 6 4 10 10 O 1.21296 * 120.00158 * 68.75382 * 9 7 6 11 11 N 1.34781 * 120.00086 * 248.74545 * 9 7 6 12 12 C 1.46493 * 119.99903 * 359.73046 * 11 9 7 13 13 C 1.37099 * 119.99754 * 180.02562 * 11 9 7 14 14 H 1.07991 * 120.00526 * 21.58336 * 13 11 9 15 15 C 1.38957 * 119.99376 * 201.58878 * 13 11 9 16 16 N 1.31404 * 120.00293 * 15.72091 * 15 13 11 17 17 Si 1.86800 * 119.99513 * 195.72282 * 15 13 11 18 18 H 1.48494 * 109.47249 * 89.99901 * 17 15 13 19 19 H 1.48499 * 109.47034 * 209.99927 * 17 15 13 20 20 H 1.48505 * 109.47189 * 329.99654 * 17 15 13 21 21 H 1.09000 * 109.47412 * 299.99785 * 1 2 3 22 22 H 1.08998 * 109.47020 * 60.00285 * 1 2 3 23 23 H 1.09002 * 109.46581 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47412 * 240.00215 * 2 1 3 25 25 H 1.08998 * 109.47020 * 119.99714 * 2 1 3 26 26 H 1.09004 * 117.50734 * 145.03572 * 6 4 3 27 27 H 1.08995 * 117.51550 * 359.97438 * 6 4 3 28 28 H 1.09003 * 109.47461 * 87.63460 * 12 11 9 29 29 H 1.09002 * 109.47222 * 207.63759 * 12 11 9 30 30 H 1.09004 * 109.47417 * 327.63419 * 12 11 9 31 31 H 0.97002 * 119.99941 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9771 0.5199 -0.0730 6 6 4.0511 2.5741 0.8478 7 6 4.0424 2.6876 -0.6780 8 1 3.3583 3.4087 -1.1251 9 6 5.3542 2.5039 -1.3968 10 8 5.8838 1.4130 -1.4231 11 7 5.9388 3.5518 -2.0105 12 6 5.2962 4.8680 -1.9839 13 6 7.1319 3.3845 -2.6649 14 1 7.4337 2.4015 -2.9947 15 6 7.9529 4.4800 -2.9035 16 7 7.7554 5.6035 -2.2513 17 14 9.3373 4.3552 -4.1514 18 1 8.8342 4.7545 -5.4903 19 1 10.4475 5.2564 -3.7508 20 1 9.8307 2.9556 -4.2051 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.0055 2.3665 1.3316 27 1 3.3726 3.2207 1.4041 28 1 5.6066 5.4059 -1.0881 29 1 5.5904 5.4339 -2.8678 30 1 4.2133 4.7436 -1.9760 31 1 8.3283 6.3683 -2.4182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388579487.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:25 Heat of formation + Delta-G solvation = -46.505828 kcal Electronic energy + Delta-G solvation = -14195.354151 eV Core-core repulsion = 11671.472824 eV Total energy + Delta-G solvation = -2523.881326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.05308 -37.58761 -35.02660 -34.17150 -31.56461 -30.67484 -26.46550 -24.95469 -22.83127 -22.63954 -21.67735 -18.52088 -17.23617 -16.77554 -15.53521 -15.41710 -14.97287 -14.44737 -14.06693 -13.71622 -13.00912 -12.58373 -12.53162 -12.15302 -11.81011 -11.53359 -11.30647 -11.28115 -11.02355 -10.87323 -10.70722 -10.34356 -10.23678 -9.93895 -9.02839 -8.84913 -8.36155 -7.66791 -6.32300 -3.85200 3.15933 3.25911 3.31259 3.56692 3.70779 4.15248 4.46009 4.94780 5.06514 5.13407 5.19923 5.30347 5.39864 5.50481 5.61690 5.71928 5.88606 5.90510 5.98139 6.09499 6.16628 6.41967 6.53121 6.90372 7.22891 7.47532 7.57867 8.14750 8.50081 9.19427 9.44490 10.01458 10.72529 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.065253 B = 0.006441 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.996684 B = 4345.897890 C = 4511.250413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.361 6.361 4 C 0.040 3.960 5 H 0.120 0.880 6 C -0.160 4.160 7 C -0.168 4.168 8 H 0.117 0.883 9 C 0.472 3.528 10 O -0.595 6.595 11 N -0.439 5.439 12 C 0.112 3.888 13 C -0.308 4.308 14 H 0.100 0.900 15 C 0.031 3.969 16 N -0.879 5.879 17 Si 0.926 3.074 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.269 1.269 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 -3.883 3.562 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.280 6.280 4 C -0.019 4.019 5 H 0.138 0.862 6 C -0.198 4.198 7 C -0.190 4.190 8 H 0.135 0.865 9 C 0.260 3.740 10 O -0.480 6.480 11 N -0.156 5.156 12 C -0.032 4.032 13 C -0.436 4.436 14 H 0.117 0.883 15 C -0.173 4.173 16 N -0.517 5.517 17 Si 0.753 3.247 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.193 1.193 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.797 -4.029 3.529 11.165 hybrid contribution 0.809 0.167 -0.580 1.009 sum -8.988 -3.862 2.949 10.218 Atomic orbital electron populations 1.21746 0.93970 1.02034 1.02994 1.22495 0.95102 0.83934 1.00377 1.87770 1.19576 1.26422 1.94214 1.22646 0.80767 0.94917 1.03551 0.86198 1.23352 1.02315 1.01729 0.92421 1.22668 0.98750 1.01824 0.95760 0.86533 1.19079 0.86374 0.85599 0.82901 1.90490 1.66793 1.25916 1.64849 1.43500 1.19533 1.07512 1.45063 1.21508 0.92637 0.85549 1.03496 1.19693 0.95582 0.96272 1.32086 0.88274 1.25330 0.98477 0.95533 0.97930 1.70028 1.39694 1.03346 1.38677 0.85929 0.80016 0.78492 0.80290 1.20340 1.20955 1.19345 0.91998 0.91879 0.91224 0.93078 0.93302 0.87947 0.88149 0.92797 0.90978 0.95272 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.73 6.53 37.16 0.24 0.98 16 3 O -0.36 -5.91 10.60 -35.23 -0.37 -6.29 16 4 C 0.04 0.71 5.96 -26.69 -0.16 0.55 16 5 H 0.12 2.23 7.45 -51.93 -0.39 1.84 16 6 C -0.16 -2.79 10.19 -26.69 -0.27 -3.06 16 7 C -0.17 -3.41 5.24 -91.77 -0.48 -3.89 16 8 H 0.12 2.21 6.47 -51.93 -0.34 1.87 16 9 C 0.47 12.05 7.41 -10.98 -0.08 11.97 16 10 O -0.59 -16.95 15.94 5.54 0.09 -16.86 16 11 N -0.44 -11.68 3.02 -122.19 -0.37 -12.05 16 12 C 0.11 2.59 8.50 59.84 0.51 3.10 16 13 C -0.31 -8.81 9.28 -14.93 -0.14 -8.95 16 14 H 0.10 2.96 7.41 -52.49 -0.39 2.57 16 15 C 0.03 0.83 4.99 -17.47 -0.09 0.74 16 16 N -0.88 -23.78 10.85 55.50 0.60 -23.18 16 17 Si 0.93 20.94 29.58 -169.99 -5.03 15.91 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 27 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.05 1.28 7.80 -51.93 -0.40 0.87 16 29 H 0.07 1.74 6.81 -51.93 -0.35 1.39 16 30 H 0.03 0.57 6.11 -51.93 -0.32 0.25 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 267.04 15.07 4.02 4.02 Total: -1.00 -31.39 267.04 -5.42 -36.81 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.28 Total: 1.32 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.09 Total: 0.31 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.23 Total: -35.23 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.28 Total: -23.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.39 -5.42 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388579487.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.692 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds