Wall clock time and date at job start Sun Mar 29 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47452 * 2 1 4 4 C 1.42899 * 114.00253 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54623 * 4.40902 * 4 3 2 6 6 C 1.52995 * 117.49682 * 218.74677 * 4 3 2 7 7 C 1.52995 * 117.50111 * 150.08670 * 4 3 2 8 8 H 1.09007 * 117.49833 * 215.00289 * 7 4 3 9 9 C 1.50704 * 117.49692 * 359.97438 * 7 4 3 10 10 O 1.21290 * 120.00365 * 359.97438 * 9 7 4 11 11 N 1.34778 * 119.99622 * 180.02562 * 9 7 4 12 12 C 1.46500 * 120.00308 * 359.97438 * 11 9 7 13 13 C 1.37094 * 119.99856 * 180.02562 * 11 9 7 14 14 H 1.08007 * 120.00270 * 21.68949 * 13 11 9 15 15 C 1.38945 * 120.00120 * 201.69877 * 13 11 9 16 16 N 1.31414 * 119.99947 * 14.83407 * 15 13 11 17 17 Si 1.86803 * 120.00152 * 194.83581 * 15 13 11 18 18 H 1.48498 * 109.46917 * 59.99780 * 17 15 13 19 19 H 1.48506 * 109.47291 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47289 * 299.99685 * 17 15 13 21 21 H 1.09011 * 109.46921 * 59.99981 * 1 2 3 22 22 H 1.08991 * 109.47536 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47049 * 300.00922 * 1 2 3 24 24 H 1.09000 * 109.47116 * 240.00038 * 2 1 3 25 25 H 1.08997 * 109.46797 * 119.99819 * 2 1 3 26 26 H 1.09005 * 117.50305 * 359.97299 * 6 4 3 27 27 H 1.09004 * 117.49741 * 144.99506 * 6 4 3 28 28 H 1.09009 * 109.46612 * 90.61449 * 12 11 9 29 29 H 1.08999 * 109.47520 * 210.60920 * 12 11 9 30 30 H 1.08997 * 109.47374 * 330.61484 * 12 11 9 31 31 H 0.96998 * 120.00061 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9769 0.5197 -0.0766 6 6 4.0519 2.5709 0.8487 7 6 4.0421 2.6886 -0.6774 8 1 4.9902 2.5565 -1.1988 9 6 3.0956 3.6868 -1.2930 10 8 1.8984 3.4996 -1.2406 11 7 3.5796 4.7871 -1.9027 12 6 5.0257 5.0129 -1.9664 13 6 2.7187 5.6954 -2.4622 14 1 1.6906 5.7384 -2.1339 15 6 3.1685 6.5607 -3.4519 16 7 4.3115 6.3288 -4.0576 17 14 2.1488 8.0537 -3.9214 18 1 1.9741 8.9273 -2.7333 19 1 2.8436 8.8105 -4.9938 20 1 0.8182 7.6107 -4.4100 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 3.3739 3.2160 1.4076 27 1 5.0065 2.3613 1.3314 28 1 5.4232 4.5670 -2.8783 29 1 5.2265 6.0843 -1.9686 30 1 5.5035 4.5554 -1.1001 31 1 4.6257 6.9331 -4.7482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388579489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:28 Heat of formation + Delta-G solvation = -40.378422 kcal Electronic energy + Delta-G solvation = -14471.611523 eV Core-core repulsion = 11947.995901 eV Total energy + Delta-G solvation = -2523.615622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95639 -37.26455 -34.84984 -34.08962 -31.42711 -30.40437 -26.36922 -24.84740 -22.60610 -22.54824 -21.67997 -18.50258 -17.05762 -16.57488 -15.34209 -15.17454 -14.82936 -14.39841 -13.80787 -13.56508 -13.01950 -12.35128 -12.26224 -12.02436 -11.70517 -11.43247 -11.24539 -11.12268 -10.82262 -10.79402 -10.61961 -10.32562 -10.21260 -9.81692 -8.90806 -8.64727 -8.10688 -7.52378 -6.21163 -3.73889 3.24890 3.30036 3.34784 3.72631 3.92975 4.22447 4.53716 4.84743 5.15772 5.27547 5.30216 5.42849 5.50234 5.56726 5.63945 5.78700 5.95276 6.05030 6.14611 6.16054 6.38885 6.44444 6.52697 6.97020 7.29850 7.67272 7.73449 8.26882 8.64181 9.34233 9.58066 10.19285 10.83785 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042233 B = 0.008098 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.826279 B = 3456.766075 C = 3925.236093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.041 3.959 5 H 0.107 0.893 6 C -0.171 4.171 7 C -0.173 4.173 8 H 0.115 0.885 9 C 0.477 3.523 10 O -0.562 6.562 11 N -0.452 5.452 12 C 0.116 3.884 13 C -0.302 4.302 14 H 0.097 0.903 15 C 0.027 3.973 16 N -0.885 5.885 17 Si 0.924 3.076 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.273 1.273 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 -8.584 6.753 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.233 6.233 4 C -0.018 4.018 5 H 0.124 0.876 6 C -0.209 4.209 7 C -0.195 4.195 8 H 0.133 0.867 9 C 0.264 3.736 10 O -0.445 6.445 11 N -0.172 5.172 12 C -0.028 4.028 13 C -0.430 4.430 14 H 0.115 0.885 15 C -0.175 4.175 16 N -0.526 5.526 17 Si 0.751 3.249 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.136 -8.394 6.606 10.742 hybrid contribution 0.079 0.603 -0.457 0.760 sum 1.215 -7.791 6.149 10.000 Atomic orbital electron populations 1.21682 0.93980 1.01328 1.03550 1.22467 0.95717 0.84923 0.99094 1.88258 1.17343 1.24130 1.93615 1.22473 0.83216 0.92781 1.03339 0.87562 1.23357 1.02062 1.02710 0.92756 1.22814 1.01126 0.99865 0.95690 0.86706 1.19056 0.88179 0.81943 0.84438 1.90565 1.15442 1.75896 1.62555 1.43527 1.05908 1.18477 1.49285 1.21420 0.81526 1.01974 0.97898 1.19598 0.95123 1.10915 1.17347 0.88541 1.25287 0.97062 0.99881 0.95256 1.70015 1.21390 1.37010 1.24135 0.86032 0.79690 0.81147 0.78005 1.20037 1.21044 1.19882 0.91444 0.91745 0.92078 0.93829 0.94164 0.88114 0.88253 0.92950 0.91491 0.95487 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 37.16 0.38 -1.63 16 2 C 0.06 0.81 6.53 37.16 0.24 1.06 16 3 O -0.32 -6.29 8.48 -57.36 -0.49 -6.77 16 4 C 0.04 0.71 6.40 -26.74 -0.17 0.54 16 5 H 0.11 1.43 7.93 -51.93 -0.41 1.02 16 6 C -0.17 -2.81 10.19 -26.70 -0.27 -3.08 16 7 C -0.17 -3.42 4.80 -91.74 -0.44 -3.86 16 8 H 0.12 2.01 7.25 -51.92 -0.38 1.64 16 9 C 0.48 12.43 7.41 -10.98 -0.08 12.35 16 10 O -0.56 -16.61 14.61 -16.58 -0.24 -16.85 16 11 N -0.45 -12.26 3.02 -122.19 -0.37 -12.63 16 12 C 0.12 2.71 8.28 59.85 0.50 3.21 16 13 C -0.30 -8.84 9.28 -14.94 -0.14 -8.98 16 14 H 0.10 2.95 7.41 -52.48 -0.39 2.57 16 15 C 0.03 0.76 5.03 -17.47 -0.09 0.67 16 16 N -0.89 -24.53 10.77 55.50 0.60 -23.93 16 17 Si 0.92 21.53 29.58 -169.99 -5.03 16.51 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 1.26 7.63 -51.92 -0.40 0.86 16 29 H 0.07 1.64 7.00 -51.93 -0.36 1.27 16 30 H 0.03 0.52 6.61 -51.93 -0.34 0.18 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -33.48 265.11 -5.98 -39.45 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.37 Total: -0.04 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.07 Total: 0.27 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.23 Total: -36.56 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.73 Total: -23.63 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.48 -5.98 -39.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388579489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.925 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds