Wall clock time and date at job start Sun Mar 29 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47452 * 2 1 4 4 C 1.42899 * 114.00253 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54623 * 4.40902 * 4 3 2 6 6 C 1.52995 * 117.49682 * 218.74677 * 4 3 2 7 7 C 1.52995 * 117.50111 * 150.08670 * 4 3 2 8 8 H 1.09007 * 117.49833 * 215.00289 * 7 4 3 9 9 C 1.50704 * 117.49692 * 359.97438 * 7 4 3 10 10 O 1.21290 * 120.00365 * 359.97438 * 9 7 4 11 11 N 1.34778 * 119.99622 * 180.02562 * 9 7 4 12 12 C 1.46500 * 120.00308 * 359.97438 * 11 9 7 13 13 C 1.37094 * 119.99856 * 180.02562 * 11 9 7 14 14 H 1.08007 * 120.00270 * 21.68949 * 13 11 9 15 15 C 1.38945 * 120.00120 * 201.69877 * 13 11 9 16 16 N 1.31414 * 119.99947 * 14.83407 * 15 13 11 17 17 Si 1.86803 * 120.00152 * 194.83581 * 15 13 11 18 18 H 1.48498 * 109.46917 * 59.99780 * 17 15 13 19 19 H 1.48506 * 109.47291 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47289 * 299.99685 * 17 15 13 21 21 H 1.09011 * 109.46921 * 59.99981 * 1 2 3 22 22 H 1.08991 * 109.47536 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47049 * 300.00922 * 1 2 3 24 24 H 1.09000 * 109.47116 * 240.00038 * 2 1 3 25 25 H 1.08997 * 109.46797 * 119.99819 * 2 1 3 26 26 H 1.09005 * 117.50305 * 359.97299 * 6 4 3 27 27 H 1.09004 * 117.49741 * 144.99506 * 6 4 3 28 28 H 1.09009 * 109.46612 * 90.61449 * 12 11 9 29 29 H 1.08999 * 109.47520 * 210.60920 * 12 11 9 30 30 H 1.08997 * 109.47374 * 330.61484 * 12 11 9 31 31 H 0.96998 * 120.00061 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9769 0.5197 -0.0766 6 6 4.0519 2.5709 0.8487 7 6 4.0421 2.6886 -0.6774 8 1 4.9902 2.5565 -1.1988 9 6 3.0956 3.6868 -1.2930 10 8 1.8984 3.4996 -1.2406 11 7 3.5796 4.7871 -1.9027 12 6 5.0257 5.0129 -1.9664 13 6 2.7187 5.6954 -2.4622 14 1 1.6906 5.7384 -2.1339 15 6 3.1685 6.5607 -3.4519 16 7 4.3115 6.3288 -4.0576 17 14 2.1488 8.0537 -3.9214 18 1 1.9741 8.9273 -2.7333 19 1 2.8436 8.8105 -4.9938 20 1 0.8182 7.6107 -4.4100 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 3.3739 3.2160 1.4076 27 1 5.0065 2.3613 1.3314 28 1 5.4232 4.5670 -2.8783 29 1 5.2265 6.0843 -1.9686 30 1 5.5035 4.5554 -1.1001 31 1 4.6257 6.9331 -4.7482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388579489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:28 Heat of formation + Delta-G solvation = -62.590633 kcal Electronic energy + Delta-G solvation = -14472.574717 eV Core-core repulsion = 11947.995901 eV Total energy + Delta-G solvation = -2524.578816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66959 -38.85009 -36.63804 -35.79927 -33.53542 -31.59243 -28.38580 -26.77948 -24.35057 -23.69541 -22.96435 -20.27195 -18.90894 -18.40856 -17.17542 -16.40590 -16.34310 -16.16542 -15.68700 -15.41572 -14.56407 -13.82998 -13.70748 -13.48320 -13.26257 -13.13803 -13.05819 -12.90003 -12.63393 -12.37162 -12.14776 -12.01928 -11.78316 -11.24112 -10.99245 -10.21141 -9.89857 -9.62905 -8.32172 -5.94396 1.37672 1.38727 1.50036 1.97456 2.28495 2.71081 2.90456 3.12003 3.24741 3.95142 3.96225 4.12357 4.23557 4.32485 4.50359 4.52801 4.55638 4.69235 4.85129 4.92048 5.04776 5.05219 5.12429 5.28741 5.38008 5.45264 6.11862 6.51151 6.57668 7.22817 7.54212 8.15784 8.70768 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042233 B = 0.008098 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.826279 B = 3456.766075 C = 3925.236093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.366 6.366 4 C 0.045 3.955 5 H 0.154 0.846 6 C -0.147 4.147 7 C -0.201 4.201 8 H 0.140 0.860 9 C 0.463 3.537 10 O -0.612 6.612 11 N -0.471 5.471 12 C 0.127 3.873 13 C -0.346 4.346 14 H 0.066 0.934 15 C -0.005 4.005 16 N -0.898 5.898 17 Si 0.988 3.012 18 H -0.268 1.268 19 H -0.267 1.267 20 H -0.278 1.278 21 H 0.037 0.963 22 H 0.100 0.900 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -9.556 7.487 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.284 6.284 4 C -0.013 4.013 5 H 0.171 0.829 6 C -0.184 4.184 7 C -0.222 4.222 8 H 0.158 0.842 9 C 0.252 3.748 10 O -0.498 6.498 11 N -0.190 5.190 12 C -0.016 4.016 13 C -0.474 4.474 14 H 0.084 0.916 15 C -0.206 4.206 16 N -0.537 5.537 17 Si 0.812 3.188 18 H -0.193 1.193 19 H -0.191 1.191 20 H -0.204 1.204 21 H 0.056 0.944 22 H 0.119 0.881 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.169 0.831 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.606 -9.373 7.342 12.188 hybrid contribution -0.392 0.851 -0.684 1.160 sum 2.213 -8.523 6.658 11.039 Atomic orbital electron populations 1.21731 0.93868 1.03132 1.01743 1.22753 0.95998 0.83219 1.00977 1.88213 1.19114 1.27314 1.93749 1.22923 0.82720 0.93946 1.01756 0.82876 1.23467 1.03673 1.01287 0.90006 1.22734 1.01185 1.00265 0.98059 0.84190 1.20179 0.88764 0.82342 0.83487 1.90518 1.18012 1.77105 1.64134 1.43834 1.07027 1.18777 1.49411 1.21362 0.79823 1.01141 0.99294 1.19549 0.94840 1.13578 1.19410 0.91623 1.26059 0.98286 1.01808 0.94430 1.70081 1.22078 1.37648 1.23916 0.85087 0.77920 0.77632 0.78203 1.19292 1.19102 1.20358 0.94415 0.88094 0.92693 0.92988 0.90911 0.90608 0.83147 0.93971 0.93188 0.91229 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 10.28 71.98 0.74 -3.18 16 2 C 0.05 1.29 6.53 71.98 0.47 1.76 16 3 O -0.37 -14.31 8.48 -127.82 -1.08 -15.39 16 4 C 0.05 1.44 6.40 30.59 0.20 1.64 16 5 H 0.15 3.35 7.93 -2.39 -0.02 3.34 16 6 C -0.15 -4.38 10.19 30.62 0.31 -4.07 16 7 C -0.20 -7.60 4.80 -11.52 -0.06 -7.65 16 8 H 0.14 4.49 7.25 -2.38 -0.02 4.47 16 9 C 0.46 24.66 7.41 87.66 0.65 25.31 16 10 O -0.61 -37.85 14.61 18.10 0.26 -37.59 16 11 N -0.47 -26.14 3.02 -658.88 -1.99 -28.13 16 12 C 0.13 5.90 8.28 127.77 1.06 6.96 16 13 C -0.35 -21.03 9.28 84.04 0.78 -20.25 16 14 H 0.07 4.28 7.41 -2.91 -0.02 4.26 16 15 C 0.00 -0.26 5.03 84.92 0.43 0.17 16 16 N -0.90 -49.81 10.77 21.66 0.23 -49.57 16 17 Si 0.99 44.53 29.58 68.60 2.03 46.56 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.15 2.96 8.14 -2.38 -0.02 2.94 16 28 H 0.04 2.01 7.63 -2.38 -0.02 1.99 16 29 H 0.05 2.45 7.00 -2.39 -0.02 2.43 16 30 H 0.07 2.58 6.61 -2.39 -0.02 2.57 16 31 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -76.71 265.11 5.14 -71.57 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.11 Total: 11.86 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 4.58 Total: 0.69 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.75 Total: -77.70 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.82 Total: -52.98 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -76.71 5.14 -71.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388579489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.980 kcal (2) G-P(sol) polarization free energy of solvation -76.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds