Wall clock time and date at job start Sun Mar 29 2020 22:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99868 * 2 1 4 4 C 1.53007 * 109.46987 * 180.02562 * 3 2 1 5 5 N 1.46502 * 112.84774 * 55.29697 * 4 3 2 6 6 C 1.34774 * 119.99843 * 64.97692 * 5 4 3 7 7 O 1.21688 * 120.00177 * 5.02360 * 6 5 4 8 8 C 1.46372 * 120.00158 * 185.02185 * 6 5 4 9 9 H 1.08002 * 119.99865 * 359.97438 * 8 6 5 10 10 C 1.40047 * 120.00398 * 180.02562 * 8 6 5 11 11 N 1.30676 * 120.00076 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 120.00353 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46864 * 59.99941 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47217 * 300.00013 * 12 10 8 16 16 C 1.53779 * 113.61433 * 284.10374 * 4 3 2 17 17 C 1.53947 * 87.02034 * 220.04946 * 16 4 3 18 18 C 1.53778 * 87.11349 * 25.36135 * 17 16 4 19 19 H 1.09000 * 109.47180 * 299.99766 * 1 2 3 20 20 H 1.08999 * 109.47568 * 59.99589 * 1 2 3 21 21 H 1.09001 * 109.47209 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47195 * 300.00528 * 3 2 1 23 23 H 1.08996 * 109.47202 * 60.00585 * 3 2 1 24 24 H 0.96995 * 120.00062 * 244.97025 * 5 4 3 25 25 H 0.96998 * 120.00302 * 180.02562 * 11 10 8 26 26 H 1.09008 * 113.61273 * 334.57052 * 16 4 3 27 27 H 1.09005 * 113.61241 * 105.46673 * 16 4 3 28 28 H 1.09004 * 113.53854 * 270.81217 * 17 16 4 29 29 H 1.08999 * 113.67290 * 139.93264 * 17 16 4 30 30 H 1.09000 * 113.62151 * 220.09256 * 18 17 16 31 31 H 1.09003 * 113.61345 * 89.18789 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.0414 0.3737 -1.1109 6 6 3.8803 0.7948 -2.3810 7 8 3.3973 1.8895 -2.6025 8 6 4.2863 -0.0647 -3.4941 9 1 4.7154 -1.0362 -3.2976 10 6 4.1194 0.3730 -4.8139 11 7 3.6016 1.5490 -5.0517 12 14 4.6382 -0.7236 -6.2344 13 1 3.8769 -1.9975 -6.1799 14 1 4.3579 -0.0345 -7.5197 15 1 6.0916 -1.0108 -6.1328 16 6 4.1230 0.7935 1.3656 17 6 5.2521 1.7997 1.0780 18 6 4.2602 2.5316 0.1587 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6885 1.8464 -0.8899 23 1 1.6887 1.8463 0.8900 24 1 4.4924 -0.4662 -0.9319 25 1 3.4857 1.8520 -5.9658 26 1 3.4920 1.0745 2.2089 27 1 4.4613 -0.2416 1.4152 28 1 6.0989 1.3639 0.5477 29 1 5.5515 2.3823 1.9492 30 1 4.7090 2.8978 -0.7646 31 1 3.6668 3.2887 0.6714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388584096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:57 Heat of formation + Delta-G solvation = -65.693965 kcal Electronic energy + Delta-G solvation = -14808.296973 eV Core-core repulsion = 12283.583586 eV Total energy + Delta-G solvation = -2524.713386 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.36427 -36.71369 -36.04157 -32.47220 -31.27200 -28.31167 -26.17808 -25.47491 -25.08574 -22.14676 -20.25527 -17.98973 -17.10848 -15.83250 -15.45217 -15.34171 -15.02721 -14.55800 -14.00999 -13.70060 -12.62887 -12.43473 -12.31816 -11.91746 -11.70382 -11.32657 -11.06946 -10.92338 -10.74357 -10.44399 -10.35979 -10.15542 -10.03287 -9.69158 -9.07710 -8.78154 -7.47948 -7.35973 -6.11731 -4.56426 3.19440 3.23865 3.25991 4.13921 4.27690 4.64447 4.81614 5.06108 5.17874 5.40563 5.49274 5.59269 5.74686 5.90362 5.94759 6.00044 6.05012 6.10458 6.19133 6.24434 6.43847 6.66571 6.81278 6.88666 7.49532 7.71109 8.01897 8.24319 8.42661 9.09269 9.65255 10.67423 10.87737 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.009911 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.482518 B = 2824.362746 C = 3241.012902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.177 3.823 5 N -0.737 5.737 6 C 0.562 3.438 7 O -0.578 6.578 8 C -0.544 4.544 9 H 0.065 0.935 10 C 0.089 3.911 11 N -0.770 5.770 12 Si 0.905 3.095 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.269 1.269 16 C -0.138 4.138 17 C -0.138 4.138 18 C -0.136 4.136 19 H 0.031 0.969 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.038 0.962 24 H 0.382 0.618 25 H 0.267 0.733 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 -1.792 9.646 9.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.298 6.298 3 C -0.014 4.014 4 C 0.088 3.912 5 N -0.392 5.392 6 C 0.366 3.634 7 O -0.461 6.461 8 C -0.582 4.582 9 H 0.083 0.917 10 C -0.130 4.130 11 N -0.399 5.399 12 Si 0.730 3.270 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.193 1.193 16 C -0.176 4.176 17 C -0.175 4.175 18 C -0.175 4.175 19 H 0.049 0.951 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.083 0.917 23 H 0.056 0.944 24 H 0.214 0.786 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.354 -1.012 9.325 9.477 hybrid contribution 0.139 -0.734 -0.637 0.982 sum -1.215 -1.746 8.688 8.945 Atomic orbital electron populations 1.22641 0.82500 1.01865 0.99310 1.87894 1.18347 1.28269 1.95259 1.22908 0.94216 0.84431 0.99858 1.20787 0.89785 0.92940 0.87720 1.45744 1.64280 1.24267 1.04870 1.18099 0.78311 0.86592 0.80383 1.90566 1.48989 1.22792 1.83764 1.20855 1.44316 1.03097 0.89894 0.91652 1.25670 0.93112 0.94691 0.99558 1.70011 1.32333 1.16936 1.20594 0.86479 0.79686 0.80675 0.80145 1.19348 1.20658 1.19348 1.23208 0.97941 0.99581 0.96833 1.22815 0.97201 0.98279 0.99207 1.23148 0.97646 0.96334 1.00395 0.95068 0.94328 0.90332 0.91661 0.94408 0.78633 0.92234 0.90038 0.91370 0.90196 0.92121 0.89816 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.38 -7.56 10.58 -35.23 -0.37 -7.93 16 3 C 0.06 1.27 5.14 37.16 0.19 1.46 16 4 C 0.18 3.50 0.74 -131.00 -0.10 3.41 16 5 N -0.74 -17.03 5.02 -48.24 -0.24 -17.27 16 6 C 0.56 16.02 7.30 -12.99 -0.09 15.92 16 7 O -0.58 -18.25 12.93 5.20 0.07 -18.19 16 8 C -0.54 -15.65 9.54 -35.63 -0.34 -15.99 16 9 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 10 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 11 N -0.77 -23.22 11.83 55.55 0.66 -22.57 16 12 Si 0.91 20.53 29.56 -169.99 -5.02 15.50 16 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 C -0.14 -2.15 7.38 -25.83 -0.19 -2.34 16 17 C -0.14 -2.12 8.00 -25.83 -0.21 -2.33 16 18 C -0.14 -2.55 6.97 -25.92 -0.18 -2.73 16 19 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 22 H 0.07 1.53 7.10 -51.93 -0.37 1.16 16 23 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 24 H 0.38 8.05 8.64 -40.82 -0.35 7.70 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.08 1.12 8.06 -51.92 -0.42 0.70 16 27 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.87 7.28 -51.93 -0.38 1.50 16 31 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 LS Contribution 265.01 15.07 3.99 3.99 Total: -1.00 -33.54 265.01 -5.26 -38.80 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.44 Total: 6.19 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 0.10 Total: 1.47 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.41 Total: -39.84 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.31 Total: -26.12 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.54 -5.26 -38.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388584096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.891 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds