Wall clock time and date at job start Sun Mar 29 2020 22:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99868 * 2 1 4 4 C 1.53007 * 109.46987 * 180.02562 * 3 2 1 5 5 N 1.46502 * 112.84774 * 55.29697 * 4 3 2 6 6 C 1.34774 * 119.99843 * 64.97692 * 5 4 3 7 7 O 1.21688 * 120.00177 * 5.02360 * 6 5 4 8 8 C 1.46372 * 120.00158 * 185.02185 * 6 5 4 9 9 H 1.08002 * 119.99865 * 359.97438 * 8 6 5 10 10 C 1.40047 * 120.00398 * 180.02562 * 8 6 5 11 11 N 1.30676 * 120.00076 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 120.00353 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46864 * 59.99941 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47217 * 300.00013 * 12 10 8 16 16 C 1.53779 * 113.61433 * 284.10374 * 4 3 2 17 17 C 1.53947 * 87.02034 * 220.04946 * 16 4 3 18 18 C 1.53778 * 87.11349 * 25.36135 * 17 16 4 19 19 H 1.09000 * 109.47180 * 299.99766 * 1 2 3 20 20 H 1.08999 * 109.47568 * 59.99589 * 1 2 3 21 21 H 1.09001 * 109.47209 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47195 * 300.00528 * 3 2 1 23 23 H 1.08996 * 109.47202 * 60.00585 * 3 2 1 24 24 H 0.96995 * 120.00062 * 244.97025 * 5 4 3 25 25 H 0.96998 * 120.00302 * 180.02562 * 11 10 8 26 26 H 1.09008 * 113.61273 * 334.57052 * 16 4 3 27 27 H 1.09005 * 113.61241 * 105.46673 * 16 4 3 28 28 H 1.09004 * 113.53854 * 270.81217 * 17 16 4 29 29 H 1.08999 * 113.67290 * 139.93264 * 17 16 4 30 30 H 1.09000 * 113.62151 * 220.09256 * 18 17 16 31 31 H 1.09003 * 113.61345 * 89.18789 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.0414 0.3737 -1.1109 6 6 3.8803 0.7948 -2.3810 7 8 3.3973 1.8895 -2.6025 8 6 4.2863 -0.0647 -3.4941 9 1 4.7154 -1.0362 -3.2976 10 6 4.1194 0.3730 -4.8139 11 7 3.6016 1.5490 -5.0517 12 14 4.6382 -0.7236 -6.2344 13 1 3.8769 -1.9975 -6.1799 14 1 4.3579 -0.0345 -7.5197 15 1 6.0916 -1.0108 -6.1328 16 6 4.1230 0.7935 1.3656 17 6 5.2521 1.7997 1.0780 18 6 4.2602 2.5316 0.1587 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6885 1.8464 -0.8899 23 1 1.6887 1.8463 0.8900 24 1 4.4924 -0.4662 -0.9319 25 1 3.4857 1.8520 -5.9658 26 1 3.4920 1.0745 2.2089 27 1 4.4613 -0.2416 1.4152 28 1 6.0989 1.3639 0.5477 29 1 5.5515 2.3823 1.9492 30 1 4.7090 2.8978 -0.7646 31 1 3.6668 3.2887 0.6714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388584096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:57 Heat of formation + Delta-G solvation = -91.306354 kcal Electronic energy + Delta-G solvation = -14809.407609 eV Core-core repulsion = 12283.583586 eV Total energy + Delta-G solvation = -2525.824023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94605 -38.37243 -37.87754 -34.62119 -33.23204 -29.83633 -28.20639 -26.91395 -26.46569 -23.70504 -22.08818 -19.67703 -19.13297 -17.45735 -17.26414 -16.91941 -16.60439 -16.04736 -15.75211 -15.31121 -14.51315 -14.25089 -13.95822 -13.39116 -13.14941 -13.04515 -12.80703 -12.62976 -12.51957 -12.11686 -12.05410 -11.74038 -11.49589 -11.13273 -10.89062 -10.57863 -9.68075 -9.29647 -8.24718 -6.80779 1.38446 1.42333 1.53052 2.25072 2.52249 2.82983 3.14050 3.62495 3.66374 3.90404 4.07818 4.13882 4.33221 4.47505 4.52204 4.65581 4.72844 4.78177 4.82756 4.91901 5.08461 5.24633 5.28918 5.34392 5.49780 5.92673 6.25282 6.27987 6.48724 6.90570 7.64413 8.56454 8.74430 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.009911 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.482518 B = 2824.362746 C = 3241.012902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.070 3.930 4 C 0.148 3.852 5 N -0.729 5.729 6 C 0.548 3.452 7 O -0.620 6.620 8 C -0.578 4.578 9 H 0.080 0.920 10 C 0.031 3.969 11 N -0.822 5.822 12 Si 0.993 3.007 13 H -0.257 1.257 14 H -0.274 1.274 15 H -0.254 1.254 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.143 4.143 19 H 0.061 0.939 20 H 0.021 0.979 21 H 0.100 0.900 22 H 0.014 0.986 23 H 0.075 0.925 24 H 0.391 0.609 25 H 0.272 0.728 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -3.261 11.126 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.008 4.008 4 C 0.060 3.940 5 N -0.381 5.381 6 C 0.352 3.648 7 O -0.506 6.506 8 C -0.615 4.615 9 H 0.098 0.902 10 C -0.184 4.184 11 N -0.452 5.452 12 Si 0.813 3.187 13 H -0.181 1.181 14 H -0.199 1.199 15 H -0.178 1.178 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.182 4.182 19 H 0.080 0.920 20 H 0.040 0.960 21 H 0.118 0.882 22 H 0.033 0.967 23 H 0.093 0.907 24 H 0.224 0.776 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.052 0.948 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.899 -2.507 10.861 11.183 hybrid contribution -0.067 -0.247 -1.026 1.058 sum -0.967 -2.754 9.835 10.258 Atomic orbital electron populations 1.22872 0.80490 1.03564 0.99960 1.87844 1.20652 1.28178 1.95363 1.22815 0.94392 0.84496 0.99125 1.21284 0.90021 0.93666 0.89030 1.45421 1.63495 1.24741 1.04491 1.18381 0.77977 0.86157 0.82290 1.90526 1.50735 1.24417 1.84961 1.21413 1.45066 1.03977 0.91055 0.90163 1.26884 0.92389 0.96235 1.02853 1.70179 1.33801 1.19460 1.21710 0.85147 0.79831 0.78245 0.75512 1.18150 1.19850 1.17836 1.23157 0.97339 1.00245 0.94473 1.22743 0.96202 0.97749 0.99243 1.23199 0.98992 0.96604 0.99384 0.92008 0.96032 0.88178 0.96728 0.90691 0.77587 0.91791 0.87005 0.90346 0.91263 0.88553 0.94789 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -15.66 10.58 -148.98 -1.58 -17.24 16 3 C 0.07 2.76 5.14 71.98 0.37 3.13 16 4 C 0.15 5.79 0.74 4.13 0.00 5.79 16 5 N -0.73 -34.17 5.02 -424.76 -2.13 -36.30 16 6 C 0.55 32.47 7.30 86.36 0.63 33.10 16 7 O -0.62 -41.34 12.93 -4.31 -0.06 -41.40 16 8 C -0.58 -33.98 9.54 24.83 0.24 -33.74 16 9 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 10 C 0.03 1.79 5.50 85.30 0.47 2.26 16 11 N -0.82 -51.36 11.83 21.84 0.26 -51.10 16 12 Si 0.99 42.35 29.56 68.60 2.03 44.37 16 13 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 16 C -0.11 -3.18 7.38 31.18 0.23 -2.95 16 17 C -0.12 -3.46 8.00 31.18 0.25 -3.21 16 18 C -0.14 -5.32 6.97 31.12 0.22 -5.11 16 19 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 21 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 22 H 0.01 0.71 7.10 -2.39 -0.02 0.69 16 23 H 0.08 2.36 8.09 -2.39 -0.02 2.34 16 24 H 0.39 16.47 8.64 -92.71 -0.80 15.67 16 25 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 26 H 0.11 2.49 8.06 -2.38 -0.02 2.47 16 27 H 0.08 2.06 8.09 -2.38 -0.02 2.04 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.03 1.58 7.28 -2.39 -0.02 1.57 16 31 H 0.10 3.07 8.10 -2.39 -0.02 3.05 16 Total: -1.00 -76.89 265.01 2.49 -74.40 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.32 Total: 25.92 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 3.65 Total: 1.35 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.87 Total: -87.41 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -1.63 Total: -58.64 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -76.89 2.49 -74.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388584096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.908 kcal (2) G-P(sol) polarization free energy of solvation -76.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds