Wall clock time and date at job start Sun Mar 29 2020 22:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99984 * 2 1 4 4 C 1.50698 * 109.47057 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00333 * 5.32848 * 4 3 2 6 6 N 1.34782 * 119.99996 * 185.33585 * 4 3 2 7 7 C 1.46500 * 119.99805 * 185.07155 * 6 4 3 8 8 C 1.53003 * 109.46687 * 183.90207 * 7 6 4 9 9 C 1.50692 * 115.55352 * 294.93134 * 8 7 6 10 10 H 1.08004 * 120.00193 * 114.84928 * 9 8 7 11 11 C 1.37876 * 120.00060 * 294.57283 * 9 8 7 12 12 N 1.31520 * 119.99970 * 174.41108 * 11 9 8 13 13 Si 1.86801 * 120.00086 * 354.41392 * 11 9 8 14 14 H 1.48504 * 109.46972 * 93.26370 * 13 11 9 15 15 H 1.48497 * 109.47187 * 213.26549 * 13 11 9 16 16 H 1.48494 * 109.46845 * 333.26496 * 13 11 9 17 17 C 1.53000 * 117.49677 * 80.60360 * 8 7 6 18 18 C 1.53004 * 117.49439 * 149.26118 * 8 7 6 19 19 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47189 * 299.99957 * 1 2 3 21 21 H 1.09003 * 109.47324 * 60.00549 * 1 2 3 22 22 H 1.08991 * 109.47356 * 59.99890 * 3 2 1 23 23 H 1.09004 * 109.46974 * 299.99828 * 3 2 1 24 24 H 0.96999 * 119.99678 * 5.07079 * 6 4 3 25 25 H 1.08996 * 109.47192 * 63.90566 * 7 6 4 26 26 H 1.08997 * 109.47400 * 303.90140 * 7 6 4 27 27 H 0.97001 * 119.99658 * 180.02562 * 12 11 9 28 28 H 1.09002 * 117.49844 * 214.99719 * 17 8 7 29 29 H 1.08997 * 117.50038 * 0.02562 * 17 8 7 30 30 H 1.08994 * 117.49893 * 359.97438 * 18 8 7 31 31 H 1.09001 * 117.49714 * 144.97750 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0344 0.0962 -0.0986 6 7 4.2761 2.2918 0.1078 7 6 5.7332 2.1892 -0.0043 8 6 6.3620 3.5606 0.2509 9 6 6.0334 4.6253 -0.7636 10 1 5.4571 5.4906 -0.4710 11 6 6.4733 4.4976 -2.0640 12 7 6.0955 5.3683 -2.9745 13 14 7.6057 3.0879 -2.5328 14 1 6.7958 1.9468 -3.0303 15 1 8.5379 3.5352 -3.5987 16 1 8.3835 2.6609 -1.3421 17 6 6.5315 4.0001 1.7066 18 6 7.7553 3.5923 0.8824 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6886 1.8464 0.8899 23 1 1.6886 1.8463 -0.8900 24 1 3.8608 3.1551 0.2600 25 1 5.9976 1.8490 -1.0054 26 1 6.1050 1.4764 0.7317 27 1 6.4047 5.2782 -3.8895 28 1 6.4054 5.0594 1.9304 29 1 6.1955 3.3122 2.4824 30 1 8.2237 2.6364 1.1164 31 1 8.4343 4.3831 0.5637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388598554.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:17 Heat of formation + Delta-G solvation = -58.368410 kcal Electronic energy + Delta-G solvation = -14310.356975 eV Core-core repulsion = 11785.961248 eV Total energy + Delta-G solvation = -2524.395726 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.34131 -37.55228 -36.74422 -33.42444 -32.21229 -29.18441 -26.82690 -25.76791 -24.54968 -21.67279 -20.02820 -19.24199 -17.13341 -16.73828 -16.17244 -15.98662 -15.09619 -14.90321 -14.26770 -14.17276 -13.49870 -12.97858 -12.68190 -12.54332 -12.25511 -11.86714 -11.46059 -11.09268 -10.73744 -10.61843 -10.29027 -9.77200 -9.65128 -9.35398 -9.16909 -8.81492 -8.53109 -8.32256 -6.20755 -4.23919 3.05194 3.19906 3.28754 3.37971 3.43699 4.29894 4.37090 4.83555 5.08330 5.16102 5.20707 5.30130 5.31266 5.40628 5.57363 5.66017 5.94845 6.10992 6.21343 6.42406 6.48180 6.68737 6.91188 6.96545 7.05303 7.15897 7.64116 8.13079 8.37700 8.73309 8.80359 9.42940 10.90086 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032601 B = 0.008768 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.655560 B = 3192.776188 C = 3451.435081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.043 3.957 4 C 0.506 3.494 5 O -0.539 6.539 6 N -0.700 5.700 7 C 0.155 3.845 8 C -0.020 4.020 9 C -0.491 4.491 10 H 0.078 0.922 11 C 0.083 3.917 12 N -0.893 5.893 13 Si 0.865 3.135 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.248 1.248 17 C -0.180 4.180 18 C -0.184 4.184 19 H 0.087 0.913 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.407 0.593 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.266 0.734 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 -4.935 6.314 10.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.037 4.037 4 C 0.291 3.709 5 O -0.416 6.416 6 N -0.352 5.352 7 C 0.032 3.968 8 C -0.021 4.021 9 C -0.528 4.528 10 H 0.096 0.904 11 C -0.120 4.120 12 N -0.529 5.529 13 Si 0.692 3.308 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.172 1.172 17 C -0.217 4.217 18 C -0.222 4.222 19 H 0.106 0.894 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.242 0.758 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.804 -5.825 6.022 10.793 hybrid contribution 0.194 0.054 -0.417 0.463 sum -6.610 -5.771 5.605 10.412 Atomic orbital electron populations 1.22807 0.80904 1.02927 1.00044 1.88006 1.19369 1.25781 1.95423 1.22281 0.92360 0.86404 1.02623 1.20170 0.88422 0.84849 0.77489 1.90675 1.74721 1.26892 1.49351 1.45733 1.07756 1.09721 1.71996 1.21088 0.78544 0.96982 1.00173 1.19622 0.95641 0.93725 0.93091 1.20229 1.35405 1.05144 0.92006 0.90373 1.24918 0.95271 0.95722 0.96126 1.69892 1.43946 1.36413 1.02629 0.87043 0.81755 0.82754 0.79201 1.20347 1.21753 1.17169 1.22807 1.03882 1.00603 0.94435 1.23034 0.92095 1.01172 1.05940 0.89411 0.93978 0.93873 0.90553 0.89979 0.75795 0.92482 0.93123 0.92429 0.89577 0.90859 0.91057 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -5.76 10.24 -55.08 -0.56 -6.32 16 3 C 0.04 0.63 6.42 36.00 0.23 0.86 16 4 C 0.51 9.69 7.90 -10.98 -0.09 9.60 16 5 O -0.54 -12.57 16.50 -14.29 -0.24 -12.81 16 6 N -0.70 -13.37 5.48 -60.30 -0.33 -13.70 16 7 C 0.16 3.34 5.15 -4.04 -0.02 3.32 16 8 C -0.02 -0.43 0.84 -155.66 -0.13 -0.56 16 9 C -0.49 -12.70 9.16 -34.44 -0.32 -13.01 16 10 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 11 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 12 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 13 Si 0.87 21.17 24.97 -169.99 -4.25 16.93 16 14 H -0.28 -6.95 7.02 56.52 0.40 -6.56 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.25 -5.71 5.73 56.52 0.32 -5.39 16 17 C -0.18 -3.41 9.96 -26.69 -0.27 -3.67 16 18 C -0.18 -3.73 8.03 -26.69 -0.21 -3.95 16 19 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.41 7.01 8.34 -40.82 -0.34 6.67 16 25 H 0.06 1.36 5.05 -51.93 -0.26 1.10 16 26 H 0.05 1.05 8.07 -51.93 -0.42 0.64 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 266.04 15.07 4.01 4.01 Total: -1.00 -31.94 266.04 -4.85 -36.79 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.47 Total: 4.16 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 0.21 Total: -3.81 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.44 Total: -38.95 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.80 Total: -19.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.25 Total: 16.93 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.94 -4.85 -36.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388598554.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.576 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds