Wall clock time and date at job start Sun Mar 29 2020 22:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99984 * 2 1 4 4 C 1.50698 * 109.47057 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00333 * 5.32848 * 4 3 2 6 6 N 1.34782 * 119.99996 * 185.33585 * 4 3 2 7 7 C 1.46500 * 119.99805 * 185.07155 * 6 4 3 8 8 C 1.53003 * 109.46687 * 183.90207 * 7 6 4 9 9 C 1.50692 * 115.55352 * 294.93134 * 8 7 6 10 10 H 1.08004 * 120.00193 * 114.84928 * 9 8 7 11 11 C 1.37876 * 120.00060 * 294.57283 * 9 8 7 12 12 N 1.31520 * 119.99970 * 174.41108 * 11 9 8 13 13 Si 1.86801 * 120.00086 * 354.41392 * 11 9 8 14 14 H 1.48504 * 109.46972 * 93.26370 * 13 11 9 15 15 H 1.48497 * 109.47187 * 213.26549 * 13 11 9 16 16 H 1.48494 * 109.46845 * 333.26496 * 13 11 9 17 17 C 1.53000 * 117.49677 * 80.60360 * 8 7 6 18 18 C 1.53004 * 117.49439 * 149.26118 * 8 7 6 19 19 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47189 * 299.99957 * 1 2 3 21 21 H 1.09003 * 109.47324 * 60.00549 * 1 2 3 22 22 H 1.08991 * 109.47356 * 59.99890 * 3 2 1 23 23 H 1.09004 * 109.46974 * 299.99828 * 3 2 1 24 24 H 0.96999 * 119.99678 * 5.07079 * 6 4 3 25 25 H 1.08996 * 109.47192 * 63.90566 * 7 6 4 26 26 H 1.08997 * 109.47400 * 303.90140 * 7 6 4 27 27 H 0.97001 * 119.99658 * 180.02562 * 12 11 9 28 28 H 1.09002 * 117.49844 * 214.99719 * 17 8 7 29 29 H 1.08997 * 117.50038 * 0.02562 * 17 8 7 30 30 H 1.08994 * 117.49893 * 359.97438 * 18 8 7 31 31 H 1.09001 * 117.49714 * 144.97750 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0344 0.0962 -0.0986 6 7 4.2761 2.2918 0.1078 7 6 5.7332 2.1892 -0.0043 8 6 6.3620 3.5606 0.2509 9 6 6.0334 4.6253 -0.7636 10 1 5.4571 5.4906 -0.4710 11 6 6.4733 4.4976 -2.0640 12 7 6.0955 5.3683 -2.9745 13 14 7.6057 3.0879 -2.5328 14 1 6.7958 1.9468 -3.0303 15 1 8.5379 3.5352 -3.5987 16 1 8.3835 2.6609 -1.3421 17 6 6.5315 4.0001 1.7066 18 6 7.7553 3.5923 0.8824 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6886 1.8464 0.8899 23 1 1.6886 1.8463 -0.8900 24 1 3.8608 3.1551 0.2600 25 1 5.9976 1.8490 -1.0054 26 1 6.1050 1.4764 0.7317 27 1 6.4047 5.2782 -3.8895 28 1 6.4054 5.0594 1.9304 29 1 6.1955 3.3122 2.4824 30 1 8.2237 2.6364 1.1164 31 1 8.4343 4.3831 0.5637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388598554.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:17 Heat of formation + Delta-G solvation = -81.993848 kcal Electronic energy + Delta-G solvation = -14311.381451 eV Core-core repulsion = 11785.961248 eV Total energy + Delta-G solvation = -2525.420202 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.82302 -38.93897 -38.16259 -35.02699 -34.27210 -30.42639 -28.32471 -27.25380 -25.99253 -23.25138 -21.54362 -21.01620 -18.80220 -18.09872 -17.47875 -17.32510 -16.86317 -16.32134 -15.72972 -15.60026 -15.00015 -14.86370 -14.25318 -13.95318 -13.89549 -13.12674 -13.02434 -12.67903 -12.34794 -12.18581 -12.08047 -11.49005 -11.04775 -10.90690 -10.75543 -10.70421 -10.33367 -9.95269 -8.32089 -6.35583 1.31032 1.38225 1.47563 1.59119 1.94162 2.34048 2.95578 3.17550 3.38538 3.82418 4.02197 4.21173 4.26322 4.33407 4.46616 4.51831 4.54259 4.59377 4.79492 4.86817 4.92555 5.07496 5.26380 5.48347 5.54873 5.68597 6.07164 6.29229 6.64899 6.74094 7.26474 7.33551 8.81950 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032601 B = 0.008768 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.655560 B = 3192.776188 C = 3451.435081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.050 3.950 4 C 0.500 3.500 5 O -0.587 6.587 6 N -0.697 5.697 7 C 0.161 3.839 8 C -0.045 4.045 9 C -0.475 4.475 10 H 0.050 0.950 11 C 0.035 3.965 12 N -0.938 5.938 13 Si 0.912 3.088 14 H -0.290 1.290 15 H -0.295 1.295 16 H -0.224 1.224 17 C -0.152 4.152 18 C -0.183 4.183 19 H 0.098 0.902 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.114 0.886 23 H 0.100 0.900 24 H 0.416 0.584 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.264 0.736 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.830 -5.489 7.987 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.029 4.029 4 C 0.287 3.713 5 O -0.467 6.467 6 N -0.349 5.349 7 C 0.036 3.964 8 C -0.046 4.046 9 C -0.512 4.512 10 H 0.068 0.932 11 C -0.164 4.164 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.222 1.222 16 H -0.146 1.146 17 C -0.189 4.189 18 C -0.221 4.221 19 H 0.116 0.884 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.132 0.868 23 H 0.118 0.882 24 H 0.253 0.747 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.331 -6.360 7.727 12.406 hybrid contribution 0.274 0.255 -0.877 0.954 sum -7.057 -6.105 6.850 11.576 Atomic orbital electron populations 1.23062 0.78223 1.04261 1.01679 1.87952 1.22283 1.26496 1.95798 1.22302 0.88649 0.86747 1.05211 1.21063 0.90530 0.83819 0.75860 1.90645 1.76037 1.28583 1.51473 1.45716 1.07055 1.10402 1.71742 1.20883 0.80042 0.96568 0.98865 1.19463 0.97818 0.93015 0.94309 1.20375 1.33380 1.04872 0.92588 0.93219 1.25541 0.96796 0.97533 0.96515 1.70002 1.46160 1.38605 1.03008 0.86303 0.80348 0.79972 0.79558 1.21748 1.22197 1.14589 1.22857 1.01745 1.01397 0.92895 1.23088 0.91507 1.02079 1.05448 0.88391 0.91849 0.92637 0.86788 0.88192 0.74746 0.95230 0.92168 0.92653 0.89324 0.88162 0.89061 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -11.95 10.24 -130.00 -1.33 -13.28 16 3 C 0.05 1.33 6.42 71.24 0.46 1.78 16 4 C 0.50 18.50 7.90 87.66 0.69 19.19 16 5 O -0.59 -27.16 16.50 15.97 0.26 -26.90 16 6 N -0.70 -25.57 5.48 -463.07 -2.54 -28.11 16 7 C 0.16 6.66 5.15 86.38 0.44 7.11 16 8 C -0.04 -1.88 0.84 -52.93 -0.04 -1.93 16 9 C -0.47 -24.43 9.16 25.60 0.23 -24.19 16 10 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 11 C 0.04 1.93 5.47 84.65 0.46 2.40 16 12 N -0.94 -55.84 13.96 21.45 0.30 -55.54 16 13 Si 0.91 43.80 24.97 68.60 1.71 45.51 16 14 H -0.29 -14.48 7.02 99.48 0.70 -13.78 16 15 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 16 H -0.22 -9.71 5.73 99.48 0.57 -9.14 16 17 C -0.15 -5.24 9.96 30.62 0.30 -4.93 16 18 C -0.18 -6.87 8.03 30.62 0.25 -6.62 16 19 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 24 H 0.42 13.59 8.34 -92.71 -0.77 12.81 16 25 H 0.03 1.39 5.05 -2.39 -0.01 1.38 16 26 H 0.06 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -69.59 266.04 2.66 -66.93 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.20 Total: 16.92 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 4.05 Total: -5.53 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.24 Total: -83.65 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.07 Total: -40.18 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.71 Total: 45.51 kcal Total: -69.59 2.66 -66.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388598554.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.062 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds