Wall clock time and date at job start Sun Mar 29 2020 22:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47385 * 179.97438 * 3 2 1 5 5 C 1.50691 * 115.55166 * 294.85386 * 4 3 2 6 6 O 1.21284 * 119.99928 * 99.24708 * 5 4 3 7 7 N 1.34780 * 120.00053 * 278.96958 * 5 4 3 8 8 C 1.46499 * 119.99874 * 175.26576 * 7 5 4 9 9 C 1.50701 * 109.47055 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99932 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00260 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00267 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99931 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46964 * 90.00706 * 13 11 9 15 15 H 1.48500 * 109.47220 * 210.00292 * 13 11 9 16 16 H 1.48495 * 109.47400 * 330.00469 * 13 11 9 17 17 C 1.53002 * 117.51573 * 80.55386 * 4 3 2 18 18 C 1.52994 * 60.00228 * 107.48005 * 17 4 3 19 19 H 1.08996 * 109.47092 * 59.99512 * 1 2 3 20 20 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46876 * 300.00138 * 1 2 3 22 22 H 1.09000 * 109.47064 * 59.99619 * 3 2 1 23 23 H 1.09004 * 109.46982 * 300.00276 * 3 2 1 24 24 H 0.96994 * 120.00063 * 355.26311 * 7 5 4 25 25 H 1.09004 * 109.47002 * 299.99639 * 8 7 5 26 26 H 1.09001 * 109.47567 * 60.00079 * 8 7 5 27 27 H 0.96997 * 120.00091 * 179.97438 * 12 11 9 28 28 H 1.08998 * 117.49958 * 214.97176 * 17 4 3 29 29 H 1.09004 * 117.49878 * 359.97438 * 17 4 3 30 30 H 1.09004 * 117.50309 * 252.50912 * 18 17 4 31 31 H 1.09007 * 117.51748 * 107.47808 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1378 0.5638 1.2346 6 8 4.4603 -0.6053 1.2296 7 7 4.3233 1.3093 2.3421 8 6 4.8115 0.6832 3.5732 9 6 4.9307 1.7264 4.6542 10 1 4.6693 2.7532 4.4449 11 6 5.3744 1.3702 5.9101 12 7 5.4779 2.2806 6.8537 13 14 5.8271 -0.4056 6.2719 14 1 7.2661 -0.6199 5.9746 15 1 5.5683 -0.7004 7.7042 16 1 5.0068 -1.3081 5.4247 17 6 4.2231 0.9065 -1.3376 18 6 4.3320 2.2905 -0.6946 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.6886 1.8463 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 4.1335 2.2603 2.3239 25 1 4.1111 -0.0896 3.8903 26 1 5.7884 0.2354 3.3906 27 1 5.7897 2.0299 7.7373 28 1 5.1111 0.2746 -1.3254 29 1 3.5888 0.8091 -2.2187 30 1 3.7695 3.1040 -1.1527 31 1 5.2916 2.5694 -0.2591 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388613173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:52 Heat of formation + Delta-G solvation = -61.273509 kcal Electronic energy + Delta-G solvation = -14204.798162 eV Core-core repulsion = 11680.276461 eV Total energy + Delta-G solvation = -2524.521701 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.65814 -37.62185 -36.04368 -34.22327 -32.28631 -28.49615 -27.88398 -25.64844 -23.44125 -22.41178 -21.22251 -19.24761 -17.32618 -16.39705 -16.15719 -15.74768 -15.22962 -15.08168 -14.34683 -14.11655 -13.72573 -13.08147 -12.48845 -12.43244 -12.09630 -11.95234 -11.57065 -11.40518 -11.04028 -10.77230 -10.53112 -10.19499 -9.93687 -9.65415 -9.47174 -9.06266 -8.75976 -8.09727 -6.20281 -4.22271 3.23167 3.28493 3.34552 3.36952 3.44361 3.95084 4.08559 4.35180 4.70544 4.96345 4.96512 5.15195 5.18405 5.27753 5.32319 5.45329 5.60926 5.63077 5.64807 5.89005 5.94209 6.13965 6.84642 7.09947 7.16400 7.27612 7.42176 8.17232 8.55964 8.77243 9.00102 9.40376 10.91655 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036018 B = 0.007515 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.206022 B = 3724.891670 C = 3906.526338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.108 3.892 4 C -0.157 4.157 5 C 0.541 3.459 6 O -0.546 6.546 7 N -0.703 5.703 8 C 0.220 3.780 9 C -0.542 4.542 10 H 0.080 0.920 11 C 0.078 3.922 12 N -0.893 5.893 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.261 1.261 17 C -0.139 4.139 18 C -0.157 4.157 19 H 0.038 0.962 20 H 0.085 0.915 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.396 0.604 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.267 0.733 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 0.570 -14.567 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.031 3.969 4 C -0.161 4.161 5 C 0.325 3.675 6 O -0.424 6.424 7 N -0.351 5.351 8 C 0.098 3.902 9 C -0.580 4.580 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.530 5.530 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.176 4.176 18 C -0.194 4.194 19 H 0.057 0.943 20 H 0.104 0.896 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.230 0.770 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.657 -0.417 -14.317 15.795 hybrid contribution -0.105 -0.117 0.424 0.452 sum -6.761 -0.535 -13.893 15.461 Atomic orbital electron populations 1.22742 0.81282 1.02793 0.99743 1.88024 1.19245 1.27186 1.95296 1.21836 0.89313 0.85168 1.00598 1.21385 0.93875 1.06066 0.94758 1.19247 0.78575 0.86357 0.83346 1.90639 1.51277 1.16804 1.83637 1.46132 1.65538 1.12035 1.11401 1.19498 0.94470 0.94703 0.81508 1.21095 1.46542 0.95860 0.94529 0.90243 1.24791 0.94396 0.97686 0.95734 1.69883 1.46102 1.33595 1.03470 0.86822 0.79779 0.85275 0.77875 1.19823 1.20881 1.18488 1.22900 1.02550 0.98131 0.94061 1.23118 1.01537 0.92241 1.02489 0.94330 0.89632 0.93976 0.92264 0.92585 0.77047 0.95787 0.96135 0.92280 0.87979 0.88087 0.87912 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.97 10.63 -35.23 -0.37 -6.34 16 3 C 0.11 1.47 5.76 37.16 0.21 1.68 16 4 C -0.16 -2.42 2.13 -155.66 -0.33 -2.75 16 5 C 0.54 11.20 6.91 -10.99 -0.08 11.13 16 6 O -0.55 -13.57 17.01 5.55 0.09 -13.48 16 7 N -0.70 -15.00 5.55 -61.47 -0.34 -15.34 16 8 C 0.22 5.61 4.50 -5.19 -0.02 5.59 16 9 C -0.54 -15.13 9.83 -34.44 -0.34 -15.47 16 10 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 11 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 12 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 13 Si 0.88 21.82 27.47 -169.99 -4.67 17.16 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 17 C -0.14 -1.82 9.88 -26.73 -0.26 -2.08 16 18 C -0.16 -1.83 9.92 -26.73 -0.27 -2.09 16 19 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 20 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.40 7.44 8.32 -40.82 -0.34 7.11 16 25 H 0.02 0.65 7.20 -51.93 -0.37 0.28 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -33.69 273.27 -4.96 -38.65 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.49 Total: 1.61 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.07 Total: -0.41 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.43 Total: -41.30 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.28 Total: -19.82 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.69 -4.96 -38.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388613173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.625 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds