Wall clock time and date at job start Sun Mar 29 2020 22:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47385 * 179.97438 * 3 2 1 5 5 C 1.50691 * 115.55166 * 294.85386 * 4 3 2 6 6 O 1.21284 * 119.99928 * 99.24708 * 5 4 3 7 7 N 1.34780 * 120.00053 * 278.96958 * 5 4 3 8 8 C 1.46499 * 119.99874 * 175.26576 * 7 5 4 9 9 C 1.50701 * 109.47055 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99932 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00260 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00267 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99931 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46964 * 90.00706 * 13 11 9 15 15 H 1.48500 * 109.47220 * 210.00292 * 13 11 9 16 16 H 1.48495 * 109.47400 * 330.00469 * 13 11 9 17 17 C 1.53002 * 117.51573 * 80.55386 * 4 3 2 18 18 C 1.52994 * 60.00228 * 107.48005 * 17 4 3 19 19 H 1.08996 * 109.47092 * 59.99512 * 1 2 3 20 20 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46876 * 300.00138 * 1 2 3 22 22 H 1.09000 * 109.47064 * 59.99619 * 3 2 1 23 23 H 1.09004 * 109.46982 * 300.00276 * 3 2 1 24 24 H 0.96994 * 120.00063 * 355.26311 * 7 5 4 25 25 H 1.09004 * 109.47002 * 299.99639 * 8 7 5 26 26 H 1.09001 * 109.47567 * 60.00079 * 8 7 5 27 27 H 0.96997 * 120.00091 * 179.97438 * 12 11 9 28 28 H 1.08998 * 117.49958 * 214.97176 * 17 4 3 29 29 H 1.09004 * 117.49878 * 359.97438 * 17 4 3 30 30 H 1.09004 * 117.50309 * 252.50912 * 18 17 4 31 31 H 1.09007 * 117.51748 * 107.47808 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1378 0.5638 1.2346 6 8 4.4603 -0.6053 1.2296 7 7 4.3233 1.3093 2.3421 8 6 4.8115 0.6832 3.5732 9 6 4.9307 1.7264 4.6542 10 1 4.6693 2.7532 4.4449 11 6 5.3744 1.3702 5.9101 12 7 5.4779 2.2806 6.8537 13 14 5.8271 -0.4056 6.2719 14 1 7.2661 -0.6199 5.9746 15 1 5.5683 -0.7004 7.7042 16 1 5.0068 -1.3081 5.4247 17 6 4.2231 0.9065 -1.3376 18 6 4.3320 2.2905 -0.6946 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.6886 1.8463 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 4.1335 2.2603 2.3239 25 1 4.1111 -0.0896 3.8903 26 1 5.7884 0.2354 3.3906 27 1 5.7897 2.0299 7.7373 28 1 5.1111 0.2746 -1.3254 29 1 3.5888 0.8091 -2.2187 30 1 3.7695 3.1040 -1.1527 31 1 5.2916 2.5694 -0.2591 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388613173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:51 Heat of formation + Delta-G solvation = -87.124242 kcal Electronic energy + Delta-G solvation = -14205.919134 eV Core-core repulsion = 11680.276461 eV Total energy + Delta-G solvation = -2525.642673 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09418 -38.85568 -37.21577 -36.17370 -34.39950 -30.21005 -29.15134 -26.63634 -25.14945 -23.42792 -22.96295 -20.88910 -18.98491 -18.03912 -17.27617 -16.94574 -16.79407 -16.59887 -15.96970 -15.63653 -15.16358 -14.68515 -14.41859 -13.98134 -13.36257 -13.23454 -13.13202 -12.74251 -12.49049 -12.31724 -11.96997 -11.69764 -11.61579 -11.23611 -10.94527 -10.78404 -10.53854 -9.97971 -8.42787 -6.49804 1.29776 1.32036 1.45134 1.64873 2.25223 2.29650 2.49586 2.92151 3.09028 3.66457 3.79337 3.96003 4.08517 4.36288 4.49930 4.53720 4.64670 4.70170 4.73056 4.84093 4.88657 4.96739 4.97807 5.19786 5.22186 5.48372 6.06085 6.24212 6.50387 6.81227 7.12858 7.37453 8.71831 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036018 B = 0.007515 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.206022 B = 3724.891670 C = 3906.526338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.108 3.892 4 C -0.183 4.183 5 C 0.537 3.463 6 O -0.595 6.595 7 N -0.701 5.701 8 C 0.232 3.768 9 C -0.547 4.547 10 H 0.062 0.938 11 C 0.029 3.971 12 N -0.928 5.928 13 Si 0.935 3.065 14 H -0.264 1.264 15 H -0.269 1.269 16 H -0.265 1.265 17 C -0.137 4.137 18 C -0.126 4.126 19 H 0.066 0.934 20 H 0.089 0.911 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.409 0.591 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.273 0.727 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.144 0.856 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 1.038 -16.197 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.032 3.968 4 C -0.186 4.186 5 C 0.324 3.676 6 O -0.476 6.476 7 N -0.350 5.350 8 C 0.108 3.892 9 C -0.584 4.584 10 H 0.080 0.920 11 C -0.171 4.171 12 N -0.567 5.567 13 Si 0.758 3.242 14 H -0.189 1.189 15 H -0.194 1.194 16 H -0.190 1.190 17 C -0.175 4.175 18 C -0.163 4.163 19 H 0.084 0.916 20 H 0.108 0.892 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.116 0.884 24 H 0.244 0.756 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.162 0.838 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.335 0.088 -15.962 17.567 hybrid contribution 0.082 -0.221 0.904 0.934 sum -7.253 -0.133 -15.058 16.715 Atomic orbital electron populations 1.22929 0.79322 1.03641 1.01145 1.87970 1.21584 1.28763 1.95616 1.21981 0.87693 0.84750 1.02420 1.21369 0.95304 1.09186 0.92748 1.20225 0.77196 0.85741 0.84417 1.90601 1.53205 1.19079 1.84678 1.46004 1.65593 1.12752 1.10657 1.19100 0.93604 0.93738 0.82727 1.21256 1.46165 0.95622 0.95392 0.92011 1.25557 0.94353 1.01555 0.95664 1.69970 1.47058 1.35549 1.04111 0.85900 0.79726 0.80351 0.78184 1.18867 1.19415 1.18992 1.23027 1.01872 0.98910 0.93641 1.23299 1.00783 0.92325 0.99859 0.91557 0.89238 0.93839 0.92588 0.88407 0.75579 0.97440 0.97238 0.91740 0.89912 0.85301 0.83823 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.42 -12.59 10.63 -148.98 -1.58 -14.17 16 3 C 0.11 2.65 5.76 71.98 0.41 3.06 16 4 C -0.18 -5.26 2.13 -52.93 -0.11 -5.37 16 5 C 0.54 22.25 6.91 87.65 0.61 22.85 16 6 O -0.59 -30.16 17.01 -3.04 -0.05 -30.21 16 7 N -0.70 -30.06 5.55 -466.79 -2.59 -32.65 16 8 C 0.23 11.99 4.50 85.63 0.39 12.38 16 9 C -0.55 -30.90 9.83 25.60 0.25 -30.65 16 10 H 0.06 3.63 7.84 -2.91 -0.02 3.61 16 11 C 0.03 1.69 5.47 84.65 0.46 2.15 16 12 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 13 Si 0.93 45.13 27.47 68.60 1.88 47.01 16 14 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 16 H -0.27 -12.94 6.54 99.48 0.65 -12.29 16 17 C -0.14 -3.24 9.88 30.59 0.30 -2.93 16 18 C -0.13 -2.50 9.92 30.59 0.30 -2.19 16 19 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 24 H 0.41 15.26 8.32 -92.71 -0.77 14.49 16 25 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 26 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 27 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -73.88 273.27 2.11 -71.77 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.29 Total: 12.73 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 3.86 Total: 1.06 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.29 Total: -88.18 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.64 Total: -44.39 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -73.88 2.11 -71.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388613173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.358 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds