Wall clock time and date at job start Sun Mar 29 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41606 * 113.99562 * 2 1 4 4 C 1.34777 * 119.99774 * 269.99755 * 3 2 1 5 5 O 1.21687 * 119.99757 * 184.93754 * 4 3 2 6 6 C 1.46367 * 120.00243 * 4.93596 * 4 3 2 7 7 H 1.08007 * 119.99998 * 0.02562 * 6 4 3 8 8 C 1.40045 * 120.00090 * 179.97438 * 6 4 3 9 9 N 1.30670 * 119.99942 * 0.02562 * 8 6 4 10 10 Si 1.86803 * 120.00089 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47183 * 60.00181 * 10 8 6 12 12 H 1.48497 * 109.46993 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46942 * 299.99931 * 10 8 6 14 14 C 1.46498 * 119.99758 * 90.00343 * 3 2 1 15 15 C 1.54263 * 110.03320 * 297.54057 * 14 3 2 16 16 C 1.54968 * 104.16221 * 95.75758 * 15 14 3 17 17 C 1.54896 * 102.77300 * 37.88684 * 16 15 14 18 18 C 1.53872 * 110.03483 * 54.75951 * 14 3 2 19 19 H 1.09005 * 109.47393 * 299.99731 * 1 2 3 20 20 H 1.09000 * 109.47336 * 59.99631 * 1 2 3 21 21 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 22 22 H 0.96997 * 120.00059 * 180.02562 * 9 8 6 23 23 H 1.09003 * 110.01667 * 176.15147 * 14 3 2 24 24 H 1.09006 * 110.48978 * 214.40207 * 15 14 3 25 25 H 1.09001 * 110.49090 * 337.04810 * 15 14 3 26 26 H 1.08998 * 110.71952 * 279.57947 * 16 15 14 27 27 H 1.08993 * 110.92430 * 156.29143 * 16 15 14 28 28 H 1.08999 * 110.48200 * 203.40363 * 17 16 15 29 29 H 1.08997 * 110.59895 * 80.82477 * 17 16 15 30 30 H 1.09000 * 110.03597 * 359.95362 * 18 14 3 31 31 H 1.09010 * 110.03254 * 121.38007 * 18 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.2789 1.9093 -1.1672 5 8 2.8553 2.9810 -1.1692 6 6 1.8834 1.2887 -2.4325 7 1 1.3715 0.3377 -2.4307 8 6 2.1677 1.9287 -3.6453 9 7 2.7866 3.0795 -3.6474 10 14 1.6623 1.1370 -5.2600 11 1 0.1880 0.9604 -5.2846 12 1 2.0758 2.0083 -6.3892 13 1 2.3217 -0.1871 -5.3899 14 6 2.3028 1.9628 1.2687 15 6 1.0003 2.1965 2.0615 16 6 0.9238 0.9890 3.0298 17 6 2.4040 0.7819 3.4365 18 6 3.1949 1.0634 2.1422 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 2.9832 3.5229 -4.4874 23 1 2.8013 2.9138 1.0810 24 1 1.0563 3.1306 2.6206 25 1 0.1412 2.2034 1.3906 26 1 0.5371 0.1080 2.5177 27 1 0.3135 1.2267 3.9010 28 1 2.5685 -0.2431 3.7688 29 1 2.6889 1.4858 4.2184 30 1 3.4055 0.1287 1.6226 31 1 4.1265 1.5780 2.3784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388666060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:08 Heat of formation + Delta-G solvation = -40.177414 kcal Electronic energy + Delta-G solvation = -15021.601508 eV Core-core repulsion = 12497.994602 eV Total energy + Delta-G solvation = -2523.606906 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.67847 -36.33313 -35.50360 -32.61847 -30.90775 -28.43403 -27.48131 -26.12857 -24.98583 -20.78835 -20.19988 -19.12098 -17.35063 -16.13622 -15.44192 -14.89922 -14.58510 -14.21966 -14.07855 -13.46359 -12.76320 -12.71750 -12.30460 -11.61764 -11.49710 -11.10194 -10.88897 -10.82509 -10.77234 -10.69614 -10.43707 -10.27120 -10.22883 -10.07871 -9.40487 -8.87662 -7.68757 -7.47772 -6.23741 -4.66482 3.14767 3.19309 3.20722 3.32579 4.13256 4.46546 5.00818 5.02125 5.19471 5.54491 5.70900 5.77816 5.84088 5.94998 5.98246 6.01599 6.02099 6.18648 6.22880 6.31672 6.36531 6.37918 6.60238 6.74174 6.82193 7.43665 7.83662 8.07183 8.34684 8.99250 9.40046 10.46863 10.67549 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049664 B = 0.009502 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.658881 B = 2945.933572 C = 3246.938699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.146 6.146 3 N -0.494 5.494 4 C 0.560 3.440 5 O -0.564 6.564 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.085 3.915 9 N -0.768 5.768 10 Si 0.910 3.090 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.267 1.267 14 C 0.142 3.858 15 C -0.140 4.140 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.131 4.131 19 H 0.043 0.957 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.270 0.730 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 -4.589 8.758 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 O -0.150 6.150 3 N -0.278 5.278 4 C 0.369 3.631 5 O -0.447 6.447 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.135 4.135 9 N -0.397 5.397 10 Si 0.735 3.265 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.191 1.191 14 C 0.039 3.961 15 C -0.179 4.179 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.169 4.169 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.124 0.876 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.692 -4.003 8.622 10.197 hybrid contribution -0.667 -0.456 -0.752 1.104 sum -4.358 -4.459 7.870 10.041 Atomic orbital electron populations 1.23310 0.84808 1.01582 1.00947 1.90475 1.17758 1.10284 1.96527 1.50629 1.62174 1.09614 1.05348 1.18473 0.78956 0.83907 0.81755 1.90638 1.46808 1.22897 1.84331 1.20912 1.39529 1.07190 0.88897 0.90762 1.25775 0.93138 0.94146 1.00428 1.69995 1.29339 1.12808 1.27577 0.86388 0.79624 0.79756 0.80768 1.19281 1.20515 1.19129 1.21568 0.94072 0.96459 0.83982 1.22899 0.98940 0.97913 0.98149 1.22570 0.96545 0.98724 0.98386 1.22297 0.95361 1.00622 0.97415 1.22510 0.98100 1.00927 0.95401 0.93833 0.92863 0.90134 0.91912 0.87646 0.91489 0.91357 0.91217 0.92402 0.92219 0.92207 0.90632 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 10.00 101.05 1.01 0.87 16 2 O -0.15 -3.16 9.85 -11.47 -0.11 -3.27 16 3 N -0.49 -11.82 2.69 -54.13 -0.15 -11.96 16 4 C 0.56 16.27 7.68 -12.99 -0.10 16.17 16 5 O -0.56 -18.15 14.38 5.20 0.07 -18.07 16 6 C -0.53 -15.20 8.77 -35.64 -0.31 -15.52 16 7 H 0.07 2.02 6.86 -52.48 -0.36 1.66 16 8 C 0.08 2.38 5.50 -17.37 -0.10 2.29 16 9 N -0.77 -22.94 11.83 55.55 0.66 -22.28 16 10 Si 0.91 20.33 29.56 -169.99 -5.02 15.31 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 C 0.14 2.88 3.40 -66.82 -0.23 2.65 16 15 C -0.14 -2.33 5.82 -25.03 -0.15 -2.48 16 16 C -0.12 -1.75 6.59 -24.69 -0.16 -1.91 16 17 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 18 C -0.13 -2.24 6.42 -25.62 -0.16 -2.41 16 19 H 0.04 0.70 4.35 -51.93 -0.23 0.47 16 20 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 21 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 22 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 23 H 0.11 2.36 6.95 -51.93 -0.36 2.00 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 26 H 0.07 1.01 6.16 -51.93 -0.32 0.69 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.42 7.58 -51.93 -0.39 1.02 16 31 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 253.64 15.07 3.82 3.82 Total: -1.00 -32.82 253.64 -5.15 -37.98 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.06 Total: 0.63 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.37 Total: -2.14 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.51 Total: -34.24 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.04 Total: -21.35 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.82 -5.15 -37.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388666060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.201 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds