Wall clock time and date at job start Sun Mar 29 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41606 * 113.99562 * 2 1 4 4 C 1.34777 * 119.99774 * 269.99755 * 3 2 1 5 5 O 1.21687 * 119.99757 * 184.93754 * 4 3 2 6 6 C 1.46367 * 120.00243 * 4.93596 * 4 3 2 7 7 H 1.08007 * 119.99998 * 0.02562 * 6 4 3 8 8 C 1.40045 * 120.00090 * 179.97438 * 6 4 3 9 9 N 1.30670 * 119.99942 * 0.02562 * 8 6 4 10 10 Si 1.86803 * 120.00089 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47183 * 60.00181 * 10 8 6 12 12 H 1.48497 * 109.46993 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46942 * 299.99931 * 10 8 6 14 14 C 1.46498 * 119.99758 * 90.00343 * 3 2 1 15 15 C 1.54263 * 110.03320 * 297.54057 * 14 3 2 16 16 C 1.54968 * 104.16221 * 95.75758 * 15 14 3 17 17 C 1.54896 * 102.77300 * 37.88684 * 16 15 14 18 18 C 1.53872 * 110.03483 * 54.75951 * 14 3 2 19 19 H 1.09005 * 109.47393 * 299.99731 * 1 2 3 20 20 H 1.09000 * 109.47336 * 59.99631 * 1 2 3 21 21 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 22 22 H 0.96997 * 120.00059 * 180.02562 * 9 8 6 23 23 H 1.09003 * 110.01667 * 176.15147 * 14 3 2 24 24 H 1.09006 * 110.48978 * 214.40207 * 15 14 3 25 25 H 1.09001 * 110.49090 * 337.04810 * 15 14 3 26 26 H 1.08998 * 110.71952 * 279.57947 * 16 15 14 27 27 H 1.08993 * 110.92430 * 156.29143 * 16 15 14 28 28 H 1.08999 * 110.48200 * 203.40363 * 17 16 15 29 29 H 1.08997 * 110.59895 * 80.82477 * 17 16 15 30 30 H 1.09000 * 110.03597 * 359.95362 * 18 14 3 31 31 H 1.09010 * 110.03254 * 121.38007 * 18 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.2789 1.9093 -1.1672 5 8 2.8553 2.9810 -1.1692 6 6 1.8834 1.2887 -2.4325 7 1 1.3715 0.3377 -2.4307 8 6 2.1677 1.9287 -3.6453 9 7 2.7866 3.0795 -3.6474 10 14 1.6623 1.1370 -5.2600 11 1 0.1880 0.9604 -5.2846 12 1 2.0758 2.0083 -6.3892 13 1 2.3217 -0.1871 -5.3899 14 6 2.3028 1.9628 1.2687 15 6 1.0003 2.1965 2.0615 16 6 0.9238 0.9890 3.0298 17 6 2.4040 0.7819 3.4365 18 6 3.1949 1.0634 2.1422 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 2.9832 3.5229 -4.4874 23 1 2.8013 2.9138 1.0810 24 1 1.0563 3.1306 2.6206 25 1 0.1412 2.2034 1.3906 26 1 0.5371 0.1080 2.5177 27 1 0.3135 1.2267 3.9010 28 1 2.5685 -0.2431 3.7688 29 1 2.6889 1.4858 4.2184 30 1 3.4055 0.1287 1.6226 31 1 4.1265 1.5780 2.3784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388666060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:07 Heat of formation + Delta-G solvation = -62.430909 kcal Electronic energy + Delta-G solvation = -15022.566492 eV Core-core repulsion = 12497.994602 eV Total energy + Delta-G solvation = -2524.571890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37956 -38.20731 -37.21270 -34.75514 -32.69984 -29.74749 -29.30825 -27.84688 -26.67225 -22.59376 -21.44377 -20.83601 -19.31430 -17.96557 -17.36450 -16.38982 -16.32388 -15.84298 -15.49956 -14.99757 -14.75898 -14.33961 -14.04920 -13.34941 -13.23860 -12.81263 -12.58708 -12.37808 -12.31378 -12.04145 -11.95488 -11.95289 -11.63773 -11.39962 -11.08950 -10.95761 -9.87896 -9.39929 -8.34680 -6.89454 1.36286 1.40122 1.50278 1.58790 2.25026 2.35548 3.47219 3.63354 3.76455 3.92141 4.17906 4.44424 4.49951 4.57814 4.62650 4.64480 4.79362 4.85984 4.89207 4.95227 5.09144 5.13384 5.27855 5.30597 5.36570 5.52123 5.85077 6.16236 6.26822 6.81707 7.39724 8.31567 8.58608 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049664 B = 0.009502 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.658881 B = 2945.933572 C = 3246.938699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.153 6.153 3 N -0.496 5.496 4 C 0.542 3.458 5 O -0.613 6.613 6 C -0.557 4.557 7 H 0.083 0.917 8 C 0.029 3.971 9 N -0.818 5.818 10 Si 0.997 3.003 11 H -0.253 1.253 12 H -0.270 1.270 13 H -0.257 1.257 14 C 0.130 3.870 15 C -0.135 4.135 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.128 4.128 19 H 0.062 0.938 20 H 0.031 0.969 21 H 0.122 0.878 22 H 0.277 0.723 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 -6.352 9.581 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.158 6.158 3 N -0.278 5.278 4 C 0.351 3.649 5 O -0.501 6.501 6 C -0.593 4.593 7 H 0.102 0.898 8 C -0.187 4.187 9 N -0.447 5.447 10 Si 0.816 3.184 11 H -0.177 1.177 12 H -0.194 1.194 13 H -0.181 1.181 14 C 0.028 3.972 15 C -0.174 4.174 16 C -0.153 4.153 17 C -0.146 4.146 18 C -0.166 4.166 19 H 0.080 0.920 20 H 0.050 0.950 21 H 0.140 0.860 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.121 -5.798 9.505 12.255 hybrid contribution -0.244 0.069 -0.930 0.964 sum -5.364 -5.728 8.575 11.624 Atomic orbital electron populations 1.23535 0.82363 1.04156 1.00802 1.90420 1.20255 1.08495 1.96612 1.50164 1.62009 1.10179 1.05413 1.18750 0.78829 0.83737 0.83573 1.90583 1.48761 1.24841 1.85867 1.21334 1.40286 1.07826 0.89820 0.89840 1.27003 0.92382 0.94437 1.04848 1.70149 1.30595 1.14760 1.29243 0.85088 0.79865 0.78754 0.74741 1.17697 1.19404 1.18069 1.21849 0.96689 0.95349 0.83315 1.22853 0.95985 1.00387 0.98165 1.22552 0.97251 0.96916 0.98609 1.22279 0.94276 1.02382 0.95674 1.22455 0.98397 0.99157 0.96610 0.91995 0.95009 0.86047 0.91280 0.91161 0.89780 0.92783 0.91600 0.89138 0.90378 0.90009 0.92546 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.37 10.00 113.37 1.13 0.77 16 2 O -0.15 -6.58 9.85 -38.80 -0.38 -6.97 16 3 N -0.50 -24.37 2.69 -443.40 -1.19 -25.56 16 4 C 0.54 32.87 7.68 86.36 0.66 33.54 16 5 O -0.61 -41.77 14.38 -4.31 -0.06 -41.84 16 6 C -0.56 -32.79 8.77 24.83 0.22 -32.57 16 7 H 0.08 4.58 6.86 -2.91 -0.02 4.56 16 8 C 0.03 1.63 5.50 85.30 0.47 2.10 16 9 N -0.82 -50.44 11.83 21.83 0.26 -50.18 16 10 Si 1.00 41.73 29.56 68.60 2.03 43.76 16 11 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 12 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 13 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 14 C 0.13 5.36 3.40 45.71 0.16 5.52 16 15 C -0.14 -4.34 5.82 31.70 0.18 -4.15 16 16 C -0.12 -2.85 6.59 31.92 0.21 -2.64 16 17 C -0.11 -2.63 6.83 31.67 0.22 -2.41 16 18 C -0.13 -4.30 6.42 31.32 0.20 -4.10 16 19 H 0.06 1.87 4.35 -2.38 -0.01 1.86 16 20 H 0.03 1.21 7.66 -2.39 -0.02 1.19 16 21 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 22 H 0.28 15.42 8.29 -92.71 -0.77 14.65 16 23 H 0.07 3.35 6.95 -2.39 -0.02 3.33 16 24 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 25 H 0.05 1.87 6.30 -2.39 -0.02 1.86 16 26 H 0.07 1.68 6.16 -2.39 -0.01 1.66 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -74.99 253.64 5.22 -69.76 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.12 Total: 14.97 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 3.45 Total: -3.95 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -0.94 Total: -75.74 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.44 Total: -48.80 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -74.99 5.22 -69.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388666060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.333 kcal (2) G-P(sol) polarization free energy of solvation -74.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds