Wall clock time and date at job start Sun Mar 29 2020 22:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34234 * 116.99800 * 2 1 4 4 O 1.20825 * 120.00013 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99817 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46689 * 185.72290 * 5 3 2 7 7 H 1.08995 * 109.87970 * 306.75780 * 6 5 3 8 8 C 1.54326 * 109.88649 * 67.93647 * 6 5 3 9 9 C 1.55154 * 102.94546 * 141.60408 * 8 6 5 10 10 C 1.54907 * 101.58280 * 324.50177 * 9 8 6 11 11 N 1.47025 * 109.87901 * 185.74267 * 6 5 3 12 12 C 1.36930 * 125.65161 * 61.60426 * 11 6 5 13 13 H 1.08002 * 119.99912 * 14.66157 * 12 11 6 14 14 C 1.38813 * 120.00317 * 194.65678 * 12 11 6 15 15 N 1.31619 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99932 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47065 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46634 * 119.99933 * 16 14 12 19 19 H 1.48496 * 109.46842 * 240.00231 * 16 14 12 20 20 H 1.08997 * 109.46904 * 59.99508 * 1 2 3 21 21 H 1.08998 * 109.46584 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46845 * 299.99534 * 1 2 3 23 23 H 1.09008 * 109.46942 * 305.72112 * 5 3 2 24 24 H 1.08991 * 109.47067 * 65.71910 * 5 3 2 25 25 H 1.08994 * 110.72003 * 259.97355 * 8 6 5 26 26 H 1.09009 * 110.72039 * 23.24270 * 8 6 5 27 27 H 1.08999 * 111.00685 * 206.42513 * 9 8 6 28 28 H 1.09000 * 111.03512 * 82.58587 * 9 8 6 29 29 H 1.09005 * 110.36182 * 278.16800 * 10 9 8 30 30 H 1.08998 * 110.37026 * 155.84907 * 10 9 8 31 31 H 0.96994 * 119.99918 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0005 2.7349 0.1434 7 1 3.5129 3.3434 -0.6182 8 6 3.6343 3.2553 1.5494 9 6 4.8477 4.1501 1.9158 10 6 6.0169 3.3709 1.2635 11 7 5.4607 2.8382 0.0064 12 6 6.1843 2.4955 -1.1044 13 1 5.6834 2.3401 -2.0484 14 6 7.5618 2.3478 -1.0171 15 7 8.1724 2.5368 0.1335 16 14 8.5489 1.8796 -2.5324 17 1 7.6333 1.7255 -3.6914 18 1 9.5418 2.9445 -2.8248 19 1 9.2561 0.5974 -2.2857 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.9609 0.6946 0.8335 24 1 3.9509 0.8722 -0.9375 25 1 2.7173 3.8436 1.5161 26 1 3.5381 2.4288 2.2535 27 1 4.9747 4.2128 2.9965 28 1 4.7478 5.1433 1.4779 29 1 6.3378 2.5556 1.9120 30 1 6.8504 4.0417 1.0554 31 1 9.1349 2.4340 0.1944 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388703930.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:10 Heat of formation + Delta-G solvation = -68.904721 kcal Electronic energy + Delta-G solvation = -14632.872794 eV Core-core repulsion = 12108.020179 eV Total energy + Delta-G solvation = -2524.852615 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14155 -37.57217 -36.01356 -32.60458 -31.00843 -29.23178 -27.67974 -25.35143 -24.28253 -20.96689 -20.18602 -19.14502 -17.35206 -16.55271 -16.29775 -16.11780 -14.85648 -14.30624 -13.85958 -13.56302 -13.07564 -12.57921 -12.06467 -11.97350 -11.81249 -11.51149 -11.22202 -10.92265 -10.81487 -10.59766 -10.12539 -10.05956 -10.01118 -9.85188 -9.73227 -9.62988 -8.59948 -6.82256 -5.77439 -3.13676 2.61359 3.06528 3.38258 3.44412 3.46393 4.47112 5.16940 5.19437 5.24396 5.36478 5.49414 5.55936 5.64550 5.73146 5.90085 6.08281 6.13709 6.32997 6.48142 6.58017 6.67077 6.77165 6.80857 7.13386 7.54704 7.62847 7.80001 8.12458 8.26942 9.17521 9.78265 10.47493 11.34583 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033833 B = 0.009192 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.403042 B = 3045.465576 C = 3672.154639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.462 3.538 4 O -0.512 6.512 5 C -0.123 4.123 6 C 0.173 3.827 7 H 0.046 0.954 8 C -0.122 4.122 9 C -0.150 4.150 10 C 0.172 3.828 11 N -0.593 5.593 12 C -0.234 4.234 13 H 0.076 0.924 14 C -0.002 4.002 15 N -0.915 5.915 16 Si 0.910 3.090 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 H 0.059 0.941 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -3.006 1.864 11.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.284 6.284 3 C 0.306 3.694 4 O -0.400 6.400 5 C -0.163 4.163 6 C 0.065 3.935 7 H 0.064 0.936 8 C -0.160 4.160 9 C -0.188 4.188 10 C 0.047 3.953 11 N -0.316 5.316 12 C -0.362 4.362 13 H 0.094 0.906 14 C -0.200 4.200 15 N -0.561 5.561 16 Si 0.740 3.260 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.216 1.216 20 H 0.077 0.923 21 H 0.113 0.887 22 H 0.077 0.923 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.442 -2.731 1.805 10.943 hybrid contribution 0.335 -0.397 -0.756 0.917 sum -10.107 -3.127 1.049 10.632 Atomic orbital electron populations 1.23155 0.77624 1.03006 1.02170 1.86589 1.22588 1.34697 1.84506 1.24516 0.92803 0.80769 0.71326 1.90602 1.67431 1.36287 1.45680 1.22338 0.84444 1.03819 1.05743 1.20800 0.86718 0.90290 0.95698 0.93633 1.22559 0.98059 0.99104 0.96261 1.23027 0.97572 0.98863 0.99372 1.21451 0.92758 0.95149 0.85939 1.44616 0.99664 1.74135 1.13216 1.19053 0.89269 1.40639 0.87274 0.90586 1.24927 0.96907 1.01113 0.97005 1.69956 1.08614 1.54466 1.23097 0.86078 0.80094 0.77869 0.81935 1.20360 1.21689 1.21630 0.92267 0.88706 0.92272 0.88436 0.87581 0.91700 0.92522 0.92405 0.92297 0.95597 0.91039 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.67 10.57 -39.27 -0.41 -6.09 16 3 C 0.46 8.14 7.68 36.01 0.28 8.41 16 4 O -0.51 -9.86 14.81 -18.75 -0.28 -10.14 16 5 C -0.12 -2.33 5.32 -27.88 -0.15 -2.48 16 6 C 0.17 3.69 2.79 -66.95 -0.19 3.51 16 7 H 0.05 1.03 7.82 -51.93 -0.41 0.62 16 8 C -0.12 -2.31 5.59 -24.90 -0.14 -2.45 16 9 C -0.15 -2.93 7.08 -24.58 -0.17 -3.11 16 10 C 0.17 4.17 5.41 -2.53 -0.01 4.15 16 11 N -0.59 -14.96 3.13 -162.57 -0.51 -15.47 16 12 C -0.23 -6.37 9.70 -15.06 -0.15 -6.52 16 13 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 14 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 15 N -0.92 -26.44 10.58 55.49 0.59 -25.86 16 16 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 21 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.10 1.81 8.00 -51.92 -0.42 1.39 16 24 H 0.11 2.05 7.83 -51.93 -0.41 1.65 16 25 H 0.06 1.18 7.86 -51.93 -0.41 0.77 16 26 H 0.06 1.02 7.76 -51.92 -0.40 0.61 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 260.64 15.07 3.93 3.93 Total: -1.00 -30.22 260.64 -5.75 -35.96 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.48 Total: -1.85 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 0.44 Total: 2.82 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.08 Total: -41.32 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.69 Total: -16.23 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.22 -5.75 -35.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388703930.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.941 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds