Wall clock time and date at job start Sun Mar 29 2020 22:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34234 * 116.99800 * 2 1 4 4 O 1.20825 * 120.00013 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99817 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46689 * 185.72290 * 5 3 2 7 7 H 1.08995 * 109.87970 * 306.75780 * 6 5 3 8 8 C 1.54326 * 109.88649 * 67.93647 * 6 5 3 9 9 C 1.55154 * 102.94546 * 141.60408 * 8 6 5 10 10 C 1.54907 * 101.58280 * 324.50177 * 9 8 6 11 11 N 1.47025 * 109.87901 * 185.74267 * 6 5 3 12 12 C 1.36930 * 125.65161 * 61.60426 * 11 6 5 13 13 H 1.08002 * 119.99912 * 14.66157 * 12 11 6 14 14 C 1.38813 * 120.00317 * 194.65678 * 12 11 6 15 15 N 1.31619 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99932 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47065 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46634 * 119.99933 * 16 14 12 19 19 H 1.48496 * 109.46842 * 240.00231 * 16 14 12 20 20 H 1.08997 * 109.46904 * 59.99508 * 1 2 3 21 21 H 1.08998 * 109.46584 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46845 * 299.99534 * 1 2 3 23 23 H 1.09008 * 109.46942 * 305.72112 * 5 3 2 24 24 H 1.08991 * 109.47067 * 65.71910 * 5 3 2 25 25 H 1.08994 * 110.72003 * 259.97355 * 8 6 5 26 26 H 1.09009 * 110.72039 * 23.24270 * 8 6 5 27 27 H 1.08999 * 111.00685 * 206.42513 * 9 8 6 28 28 H 1.09000 * 111.03512 * 82.58587 * 9 8 6 29 29 H 1.09005 * 110.36182 * 278.16800 * 10 9 8 30 30 H 1.08998 * 110.37026 * 155.84907 * 10 9 8 31 31 H 0.96994 * 119.99918 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0005 2.7349 0.1434 7 1 3.5129 3.3434 -0.6182 8 6 3.6343 3.2553 1.5494 9 6 4.8477 4.1501 1.9158 10 6 6.0169 3.3709 1.2635 11 7 5.4607 2.8382 0.0064 12 6 6.1843 2.4955 -1.1044 13 1 5.6834 2.3401 -2.0484 14 6 7.5618 2.3478 -1.0171 15 7 8.1724 2.5368 0.1335 16 14 8.5489 1.8796 -2.5324 17 1 7.6333 1.7255 -3.6914 18 1 9.5418 2.9445 -2.8248 19 1 9.2561 0.5974 -2.2857 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.9609 0.6946 0.8335 24 1 3.9509 0.8722 -0.9375 25 1 2.7173 3.8436 1.5161 26 1 3.5381 2.4288 2.2535 27 1 4.9747 4.2128 2.9965 28 1 4.7478 5.1433 1.4779 29 1 6.3378 2.5556 1.9120 30 1 6.8504 4.0417 1.0554 31 1 9.1349 2.4340 0.1944 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388703930.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:10 Heat of formation + Delta-G solvation = -87.142751 kcal Electronic energy + Delta-G solvation = -14633.663655 eV Core-core repulsion = 12108.020179 eV Total energy + Delta-G solvation = -2525.643475 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.51266 -39.25863 -37.38201 -34.58622 -32.60585 -31.14655 -28.84591 -26.96425 -26.17681 -22.39657 -21.96054 -20.83374 -18.92833 -18.33370 -17.67449 -17.40472 -16.73096 -15.95603 -15.68352 -14.97046 -14.34786 -14.12498 -13.84081 -13.69585 -13.21894 -13.05123 -12.82747 -12.79913 -12.63481 -11.95301 -11.82911 -11.78187 -11.65037 -11.51251 -11.43499 -11.36337 -10.66679 -8.84861 -7.86533 -5.24868 1.21787 1.48298 1.48758 1.59264 1.81987 2.50810 3.32983 3.64692 3.91510 3.98517 4.13128 4.24967 4.35304 4.36211 4.49298 4.50947 4.69666 4.74079 4.92250 4.98675 5.12288 5.21082 5.39185 5.49757 5.51704 5.66418 5.77988 6.23641 6.78716 7.10297 7.76536 8.44720 9.24893 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033833 B = 0.009192 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.403042 B = 3045.465576 C = 3672.154639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.474 3.526 4 O -0.530 6.530 5 C -0.116 4.116 6 C 0.168 3.832 7 H 0.032 0.968 8 C -0.111 4.111 9 C -0.136 4.136 10 C 0.175 3.825 11 N -0.612 5.612 12 C -0.242 4.242 13 H 0.079 0.921 14 C -0.057 4.057 15 N -0.946 5.946 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.293 1.293 19 H -0.290 1.290 20 H 0.060 0.940 21 H 0.131 0.869 22 H 0.064 0.936 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.003 0.997 30 H 0.036 0.964 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 -3.660 1.813 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.318 3.682 4 O -0.419 6.419 5 C -0.156 4.156 6 C 0.061 3.939 7 H 0.050 0.950 8 C -0.149 4.149 9 C -0.174 4.174 10 C 0.051 3.949 11 N -0.336 5.336 12 C -0.371 4.371 13 H 0.096 0.904 14 C -0.251 4.251 15 N -0.593 5.593 16 Si 0.803 3.197 17 H -0.190 1.190 18 H -0.220 1.220 19 H -0.217 1.217 20 H 0.079 0.921 21 H 0.149 0.851 22 H 0.082 0.918 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.063 -3.401 1.750 12.655 hybrid contribution 0.714 -0.217 -0.747 1.056 sum -11.349 -3.618 1.003 11.954 Atomic orbital electron populations 1.23546 0.74922 1.05597 1.02552 1.86543 1.25089 1.33070 1.83871 1.23948 0.92059 0.81180 0.71029 1.90598 1.67662 1.36997 1.46663 1.22008 0.86099 1.01932 1.05587 1.20861 0.84475 0.91694 0.96899 0.95002 1.22517 0.98081 0.99458 0.94845 1.22912 0.95462 0.98303 1.00729 1.21261 0.93663 0.94218 0.85805 1.44834 1.01310 1.74532 1.12966 1.19369 0.89802 1.39743 0.88224 0.90355 1.25698 0.97945 1.01744 0.99731 1.70145 1.08396 1.55838 1.24964 0.85072 0.78483 0.77035 0.79109 1.19019 1.22026 1.21707 0.92083 0.85095 0.91754 0.88014 0.88360 0.90301 0.91146 0.89546 0.91933 0.97861 0.94525 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -10.51 10.57 -51.46 -0.54 -11.05 16 3 C 0.47 15.81 7.68 71.24 0.55 16.36 16 4 O -0.53 -19.37 14.81 21.97 0.33 -19.05 16 5 C -0.12 -4.29 5.32 29.85 0.16 -4.13 16 6 C 0.17 7.05 2.79 45.34 0.13 7.17 16 7 H 0.03 1.43 7.82 -2.39 -0.02 1.41 16 8 C -0.11 -4.00 5.59 31.78 0.18 -3.82 16 9 C -0.14 -5.12 7.08 31.98 0.23 -4.89 16 10 C 0.18 8.64 5.41 86.85 0.47 9.11 16 11 N -0.61 -31.17 3.13 -668.26 -2.09 -33.26 16 12 C -0.24 -13.34 9.70 84.03 0.81 -12.52 16 13 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.06 -3.21 5.47 84.86 0.46 -2.75 16 15 N -0.95 -56.01 10.58 21.65 0.23 -55.78 16 16 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 20 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 21 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 23 H 0.10 3.66 8.00 -2.38 -0.02 3.64 16 24 H 0.10 3.77 7.83 -2.39 -0.02 3.75 16 25 H 0.08 2.66 7.86 -2.39 -0.02 2.64 16 26 H 0.07 2.34 7.76 -2.38 -0.02 2.33 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.00 0.18 8.06 -2.38 -0.02 0.16 16 30 H 0.04 2.03 6.93 -2.39 -0.02 2.01 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -64.81 260.64 5.23 -59.58 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.10 Total: 6.20 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 4.18 Total: 6.25 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -1.86 Total: -89.04 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.22 Total: -30.10 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.81 5.23 -59.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388703930.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.561 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds