Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00189 * 2 1 4 4 O 1.20822 * 119.99663 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00079 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47010 * 188.83270 * 5 3 2 7 7 H 1.09000 * 109.87429 * 306.63755 * 6 5 3 8 8 C 1.54327 * 110.00926 * 185.53638 * 6 5 3 9 9 C 1.55159 * 102.93833 * 218.31812 * 8 6 5 10 10 C 1.54681 * 101.67824 * 35.33482 * 9 8 6 11 11 N 1.47023 * 109.88397 * 67.65061 * 6 5 3 12 12 C 1.36935 * 125.64627 * 298.47714 * 11 6 5 13 13 H 1.08000 * 120.00353 * 327.45729 * 12 11 6 14 14 C 1.38815 * 119.99977 * 147.46061 * 12 11 6 15 15 N 1.31620 * 119.99969 * 340.34622 * 14 12 11 16 16 Si 1.86806 * 120.00142 * 160.34311 * 14 12 11 17 17 H 1.48493 * 109.47014 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.46754 * 300.00011 * 16 14 12 19 19 H 1.48494 * 109.46887 * 59.99952 * 16 14 12 20 20 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46864 * 299.99401 * 1 2 3 22 22 H 1.08995 * 109.47330 * 59.99702 * 1 2 3 23 23 H 1.08997 * 109.46984 * 68.83115 * 5 3 2 24 24 H 1.09000 * 109.46940 * 308.83479 * 5 3 2 25 25 H 1.09000 * 110.71700 * 336.67764 * 8 6 5 26 26 H 1.08999 * 110.71454 * 99.77483 * 8 6 5 27 27 H 1.09000 * 111.00189 * 153.58113 * 9 8 6 28 28 H 1.09000 * 110.99972 * 277.42765 * 9 8 6 29 29 H 1.09005 * 110.39497 * 204.36183 * 10 9 8 30 30 H 1.09001 * 110.23568 * 82.11737 * 10 9 8 31 31 H 0.97001 * 119.99784 * 354.33489 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0012 2.7249 0.2210 7 1 3.5131 3.3734 -0.5065 8 6 5.5339 2.8433 0.0848 9 6 5.9032 3.8649 1.1926 10 6 4.8876 3.5044 2.3022 11 7 3.6500 3.1495 1.5841 12 6 2.3828 3.2106 2.0994 13 1 1.5498 3.4554 1.4570 14 6 2.1687 2.9581 3.4475 15 7 3.0693 2.2981 4.1445 16 14 0.6026 3.5550 4.2724 17 1 0.6163 3.1613 5.7041 18 1 0.5204 5.0340 4.1669 19 1 -0.5735 2.9448 3.6019 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 3.9482 0.9234 -0.9591 24 1 3.9632 0.6501 0.7996 25 1 6.0130 1.8822 0.2713 26 1 5.8051 3.2233 -0.9002 27 1 6.9275 3.7169 1.5348 28 1 5.7524 4.8876 0.8469 29 1 4.7158 4.3618 2.9531 30 1 5.2477 2.6539 2.8810 31 1 3.8427 1.9171 3.7001 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388703935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = -66.635967 kcal Electronic energy + Delta-G solvation = -15171.549045 eV Core-core repulsion = 12646.794810 eV Total energy + Delta-G solvation = -2524.754235 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68867 -37.64855 -35.52773 -32.72691 -30.98183 -28.92784 -27.48259 -25.47427 -23.84499 -20.73341 -20.27614 -19.19721 -17.17906 -16.69513 -16.04218 -15.80372 -14.97219 -14.12705 -13.68686 -13.27917 -13.09801 -12.69772 -12.09424 -11.90086 -11.62663 -11.42604 -11.16814 -10.65171 -10.54492 -10.41876 -10.20178 -10.03168 -9.98101 -9.89112 -9.49477 -9.07946 -8.30818 -6.74189 -5.84763 -3.15989 3.17246 3.49858 3.54830 3.57840 3.76089 4.66465 5.25632 5.37300 5.39362 5.51087 5.54999 5.63745 5.73848 5.76158 5.91817 5.99246 6.05611 6.18531 6.29178 6.37280 6.51092 6.54674 6.99920 7.03346 7.14071 7.18522 8.21560 8.60664 8.87807 9.16964 9.96647 10.53007 11.37251 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.018733 C = 0.010602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.503434 B = 1494.302743 C = 2640.302533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.375 6.375 3 C 0.461 3.539 4 O -0.474 6.474 5 C -0.114 4.114 6 C 0.164 3.836 7 H 0.045 0.955 8 C -0.125 4.125 9 C -0.136 4.136 10 C 0.137 3.863 11 N -0.590 5.590 12 C -0.321 4.321 13 H 0.082 0.918 14 C -0.030 4.030 15 N -0.926 5.926 16 Si 1.067 2.933 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.294 1.294 20 H 0.089 0.911 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.028 0.972 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 -2.802 -8.375 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.293 6.293 3 C 0.303 3.697 4 O -0.358 6.358 5 C -0.154 4.154 6 C 0.056 3.944 7 H 0.063 0.937 8 C -0.163 4.163 9 C -0.175 4.175 10 C 0.012 3.988 11 N -0.315 5.315 12 C -0.450 4.450 13 H 0.099 0.901 14 C -0.231 4.231 15 N -0.567 5.567 16 Si 0.897 3.103 17 H -0.213 1.213 18 H -0.221 1.221 19 H -0.222 1.222 20 H 0.108 0.892 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.462 -2.359 -6.860 7.268 hybrid contribution 0.540 -0.215 -1.375 1.493 sum 1.003 -2.574 -8.235 8.686 Atomic orbital electron populations 1.23050 0.77848 1.02383 1.02165 1.86463 1.22390 1.35040 1.85422 1.23549 0.92092 0.80827 0.73251 1.90599 1.67046 1.35701 1.42487 1.21990 0.87899 1.02758 1.02782 1.20997 0.92231 0.90281 0.90854 0.93707 1.22560 0.95823 0.99388 0.98540 1.22752 0.98754 0.98559 0.97386 1.21571 0.86454 0.97642 0.93115 1.44577 1.02673 1.75455 1.08807 1.20226 0.83996 1.45201 0.95544 0.90054 1.25950 1.04255 0.97731 0.95168 1.70774 1.13465 1.33016 1.39452 0.83484 0.74851 0.75992 0.75927 1.21261 1.22083 1.22162 0.89224 0.91965 0.92821 0.89708 0.88877 0.91688 0.91866 0.92055 0.91975 0.93746 0.95421 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.56 101.05 1.07 1.71 16 2 O -0.37 -7.40 10.57 -39.25 -0.41 -7.82 16 3 C 0.46 10.08 7.12 36.01 0.26 10.34 16 4 O -0.47 -11.73 12.00 -18.75 -0.23 -11.96 16 5 C -0.11 -2.22 5.34 -27.88 -0.15 -2.37 16 6 C 0.16 3.45 2.92 -66.95 -0.20 3.26 16 7 H 0.05 1.00 7.78 -51.93 -0.40 0.60 16 8 C -0.13 -2.11 6.48 -24.89 -0.16 -2.27 16 9 C -0.14 -2.45 7.07 -24.70 -0.17 -2.62 16 10 C 0.14 3.22 5.72 -2.66 -0.02 3.21 16 11 N -0.59 -15.13 2.85 -162.72 -0.46 -15.60 16 12 C -0.32 -9.30 7.81 -15.06 -0.12 -9.41 16 13 H 0.08 2.49 5.59 -52.49 -0.29 2.20 16 14 C -0.03 -0.88 5.25 -17.43 -0.09 -0.97 16 15 N -0.93 -28.58 13.15 55.49 0.73 -27.85 16 16 Si 1.07 26.89 29.96 -169.99 -5.09 21.80 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.06 1.12 8.13 -51.93 -0.42 0.69 16 22 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 23 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 25 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.69 6.60 -51.93 -0.34 0.35 16 31 H 0.27 8.19 5.97 -40.82 -0.24 7.95 16 LS Contribution 255.19 15.07 3.85 3.85 Total: -1.00 -33.38 255.19 -5.49 -38.88 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.29 Total: -2.18 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 0.42 Total: 0.87 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.27 Total: -43.44 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.64 Total: -19.77 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -5.09 Total: 21.80 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.38 -5.49 -38.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388703935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.756 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds