Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00189 * 2 1 4 4 O 1.20822 * 119.99663 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00079 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47010 * 188.83270 * 5 3 2 7 7 H 1.09000 * 109.87429 * 306.63755 * 6 5 3 8 8 C 1.54327 * 110.00926 * 185.53638 * 6 5 3 9 9 C 1.55159 * 102.93833 * 218.31812 * 8 6 5 10 10 C 1.54681 * 101.67824 * 35.33482 * 9 8 6 11 11 N 1.47023 * 109.88397 * 67.65061 * 6 5 3 12 12 C 1.36935 * 125.64627 * 298.47714 * 11 6 5 13 13 H 1.08000 * 120.00353 * 327.45729 * 12 11 6 14 14 C 1.38815 * 119.99977 * 147.46061 * 12 11 6 15 15 N 1.31620 * 119.99969 * 340.34622 * 14 12 11 16 16 Si 1.86806 * 120.00142 * 160.34311 * 14 12 11 17 17 H 1.48493 * 109.47014 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.46754 * 300.00011 * 16 14 12 19 19 H 1.48494 * 109.46887 * 59.99952 * 16 14 12 20 20 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46864 * 299.99401 * 1 2 3 22 22 H 1.08995 * 109.47330 * 59.99702 * 1 2 3 23 23 H 1.08997 * 109.46984 * 68.83115 * 5 3 2 24 24 H 1.09000 * 109.46940 * 308.83479 * 5 3 2 25 25 H 1.09000 * 110.71700 * 336.67764 * 8 6 5 26 26 H 1.08999 * 110.71454 * 99.77483 * 8 6 5 27 27 H 1.09000 * 111.00189 * 153.58113 * 9 8 6 28 28 H 1.09000 * 110.99972 * 277.42765 * 9 8 6 29 29 H 1.09005 * 110.39497 * 204.36183 * 10 9 8 30 30 H 1.09001 * 110.23568 * 82.11737 * 10 9 8 31 31 H 0.97001 * 119.99784 * 354.33489 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0012 2.7249 0.2210 7 1 3.5131 3.3734 -0.5065 8 6 5.5339 2.8433 0.0848 9 6 5.9032 3.8649 1.1926 10 6 4.8876 3.5044 2.3022 11 7 3.6500 3.1495 1.5841 12 6 2.3828 3.2106 2.0994 13 1 1.5498 3.4554 1.4570 14 6 2.1687 2.9581 3.4475 15 7 3.0693 2.2981 4.1445 16 14 0.6026 3.5550 4.2724 17 1 0.6163 3.1613 5.7041 18 1 0.5204 5.0340 4.1669 19 1 -0.5735 2.9448 3.6019 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 3.9482 0.9234 -0.9591 24 1 3.9632 0.6501 0.7996 25 1 6.0130 1.8822 0.2713 26 1 5.8051 3.2233 -0.9002 27 1 6.9275 3.7169 1.5348 28 1 5.7524 4.8876 0.8469 29 1 4.7158 4.3618 2.9531 30 1 5.2477 2.6539 2.8810 31 1 3.8427 1.9171 3.7001 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388703935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = -88.610382 kcal Electronic energy + Delta-G solvation = -15172.501927 eV Core-core repulsion = 12646.794810 eV Total energy + Delta-G solvation = -2525.707117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35765 -39.34153 -37.20478 -34.77871 -32.60211 -30.86110 -28.95257 -27.09144 -25.84364 -22.46533 -21.84907 -20.99276 -19.17835 -18.38900 -17.67583 -17.40567 -16.61873 -15.94886 -15.66915 -15.10969 -14.64487 -14.29862 -13.65785 -13.54598 -13.32724 -13.01043 -12.80199 -12.60688 -12.24641 -12.01946 -11.97125 -11.78007 -11.67502 -11.48345 -11.31711 -11.06558 -10.48701 -8.86235 -8.08178 -5.39134 1.48195 1.48967 1.56506 1.75630 2.00696 2.62064 3.28546 3.56030 3.85109 3.98735 4.14356 4.21958 4.30165 4.35002 4.40254 4.52750 4.58166 4.67886 4.82004 4.89226 5.01116 5.13255 5.19414 5.39212 5.48341 5.55833 6.11242 6.48643 7.02995 7.08408 7.80116 8.40853 9.10266 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.018733 C = 0.010602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.503434 B = 1494.302743 C = 2640.302533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.453 3.547 4 O -0.513 6.513 5 C -0.111 4.111 6 C 0.154 3.846 7 H 0.031 0.969 8 C -0.111 4.111 9 C -0.122 4.122 10 C 0.136 3.864 11 N -0.613 5.613 12 C -0.313 4.313 13 H 0.063 0.937 14 C -0.083 4.083 15 N -0.953 5.953 16 Si 1.106 2.894 17 H -0.288 1.288 18 H -0.282 1.282 19 H -0.284 1.284 20 H 0.133 0.867 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.136 0.864 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.010 0.990 30 H 0.009 0.991 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 -3.348 -10.011 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.295 6.295 3 C 0.297 3.703 4 O -0.400 6.400 5 C -0.150 4.150 6 C 0.048 3.952 7 H 0.049 0.951 8 C -0.148 4.148 9 C -0.160 4.160 10 C 0.010 3.990 11 N -0.339 5.339 12 C -0.443 4.443 13 H 0.080 0.920 14 C -0.279 4.279 15 N -0.597 5.597 16 Si 0.932 3.068 17 H -0.213 1.213 18 H -0.209 1.209 19 H -0.211 1.211 20 H 0.151 0.849 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.153 0.847 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.348 -2.919 -8.533 9.119 hybrid contribution 0.234 -0.059 -0.961 0.991 sum 1.582 -2.978 -9.493 10.075 Atomic orbital electron populations 1.23355 0.75987 1.05080 1.01543 1.86450 1.24291 1.33943 1.84843 1.24140 0.93212 0.80828 0.72093 1.90582 1.68010 1.36944 1.44481 1.21998 0.86432 1.01486 1.05071 1.21195 0.95460 0.90812 0.87774 0.95129 1.22575 0.92078 1.00205 0.99963 1.22677 0.98589 0.99243 0.95492 1.21544 0.87408 0.95556 0.94448 1.44821 1.02260 1.76186 1.10589 1.20213 0.85245 1.43446 0.95376 0.91998 1.27066 1.06337 0.98215 0.96262 1.70871 1.14122 1.35203 1.39512 0.82957 0.72526 0.76241 0.75082 1.21339 1.20891 1.21073 0.84897 0.94386 0.91679 0.84662 0.89761 0.89713 0.88047 0.88816 0.91497 0.97159 0.97295 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 10.56 113.37 1.20 2.25 16 2 O -0.38 -14.47 10.57 -51.40 -0.54 -15.01 16 3 C 0.45 19.56 7.12 71.24 0.51 20.06 16 4 O -0.51 -25.63 12.00 21.98 0.26 -25.36 16 5 C -0.11 -4.08 5.34 29.85 0.16 -3.92 16 6 C 0.15 6.24 2.92 45.34 0.13 6.37 16 7 H 0.03 1.34 7.78 -2.39 -0.02 1.32 16 8 C -0.11 -3.28 6.48 31.78 0.21 -3.07 16 9 C -0.12 -4.05 7.07 31.91 0.23 -3.82 16 10 C 0.14 6.40 5.72 86.78 0.50 6.89 16 11 N -0.61 -31.65 2.85 -668.71 -1.91 -33.55 16 12 C -0.31 -18.52 7.81 84.03 0.66 -17.86 16 13 H 0.06 3.90 5.59 -2.91 -0.02 3.89 16 14 C -0.08 -5.02 5.25 84.86 0.45 -4.57 16 15 N -0.95 -60.39 13.15 21.65 0.28 -60.11 16 16 Si 1.11 55.37 29.96 68.60 2.06 57.43 16 17 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 20 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 21 H 0.04 1.36 8.13 -2.39 -0.02 1.34 16 22 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 23 H 0.14 3.59 8.14 -2.39 -0.02 3.58 16 24 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 25 H 0.08 2.23 7.86 -2.39 -0.02 2.21 16 26 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.01 0.47 6.60 -2.39 -0.02 0.45 16 31 H 0.26 16.23 5.97 -92.71 -0.55 15.68 16 Total: -1.00 -75.03 255.19 5.50 -69.53 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.32 Total: 4.76 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 4.03 Total: 2.32 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -1.62 Total: -93.66 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.28 Total: -40.37 kcal Atomic # 14 Polarization: 55.37 SS G_CDS: 2.06 Total: 57.43 kcal Total: -75.03 5.50 -69.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388703935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.085 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds