Wall clock time and date at job start Sun Mar 29 2020 21:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.54029 * 113.81509 * 273.49964 * 16 15 13 18 18 O 1.44437 * 85.43090 * 223.24114 * 17 16 15 19 19 C 1.44183 * 93.37931 * 24.09098 * 18 17 16 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 25 25 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 26 26 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 27 27 H 1.08997 * 113.00369 * 45.33271 * 16 15 13 28 28 H 1.08994 * 113.86769 * 337.35066 * 17 16 15 29 29 H 1.09007 * 113.86538 * 109.05364 * 17 16 15 30 30 H 1.08996 * 113.86508 * 221.76841 * 19 18 17 31 31 H 1.08991 * 113.98094 * 90.07329 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 4.0125 1.0576 4.8407 18 8 3.9517 0.7918 6.2591 19 6 3.1372 -0.3859 6.0900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 2.2490 -1.6316 1.1527 25 1 1.9776 -1.5506 3.8326 26 1 3.6492 -1.1202 3.3980 27 1 1.8033 0.8683 4.8391 28 1 4.8538 0.5802 4.3383 29 1 3.9018 2.1109 4.5829 30 1 2.3337 -0.4750 6.8210 31 1 3.7087 -1.3062 5.9699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388772915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:13 Heat of formation + Delta-G solvation = -62.577651 kcal Electronic energy + Delta-G solvation = -14175.401385 eV Core-core repulsion = 11650.823132 eV Total energy + Delta-G solvation = -2524.578253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.38403 -38.59360 -34.82916 -32.48043 -31.97869 -29.01281 -26.49421 -26.11147 -25.25019 -21.35994 -19.97053 -19.39285 -17.27170 -16.35847 -15.94277 -15.65539 -15.24853 -14.94396 -14.48587 -14.02649 -13.04271 -12.68426 -12.51413 -12.39748 -11.70373 -11.53834 -11.15260 -10.97636 -10.88936 -10.69378 -10.51248 -10.32333 -10.24870 -9.63742 -9.07953 -9.00103 -8.56318 -7.92189 -6.13751 -4.23395 3.24124 3.29550 3.30467 3.38736 3.72309 4.00813 4.31578 4.49564 4.88265 5.17268 5.19320 5.26706 5.29754 5.49738 5.63328 5.76908 5.81291 6.07782 6.13501 6.29506 6.80891 6.94945 7.13797 7.45156 7.54566 7.67919 7.89994 8.13786 8.65808 8.76485 9.12281 9.44409 10.92165 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064173 B = 0.006058 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.214356 B = 4621.027998 C = 4745.851161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.711 5.711 13 C 0.499 3.501 14 O -0.556 6.556 15 C -0.143 4.143 16 C -0.134 4.134 17 C 0.043 3.957 18 O -0.388 6.388 19 C 0.036 3.964 20 H 0.026 0.974 21 H 0.014 0.986 22 H 0.090 0.910 23 H 0.265 0.735 24 H 0.388 0.612 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -5.177 10.934 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.435 6.435 15 C -0.183 4.183 16 C -0.153 4.153 17 C -0.034 4.034 18 O -0.307 6.307 19 C -0.041 4.041 20 H 0.045 0.955 21 H 0.033 0.967 22 H 0.108 0.892 23 H 0.075 0.925 24 H 0.220 0.780 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.082 -4.065 11.014 12.138 hybrid contribution 0.299 -1.083 -1.133 1.595 sum 3.381 -5.148 9.881 11.644 Atomic orbital electron populations 1.22073 0.98525 0.99053 1.00873 1.18730 0.91005 0.93988 0.80122 0.93422 1.21187 1.32535 1.13242 0.90390 0.92164 1.24899 0.94796 0.94955 0.99078 1.69895 1.35771 1.22435 1.24004 0.86499 0.79154 0.79574 0.81802 1.21104 1.20183 1.20169 1.46554 1.65056 1.13526 1.10684 1.20415 0.78733 0.87617 0.84828 1.90650 1.51468 1.16193 1.85221 1.21790 1.03084 0.99398 0.94044 1.24095 1.00804 0.97071 0.93349 1.24062 0.96325 1.02017 0.80987 1.89682 1.74119 1.42240 1.24624 1.24023 0.93819 0.89846 0.96442 0.95519 0.96698 0.89180 0.92500 0.77956 0.88955 0.89165 0.87042 0.90254 0.88737 0.89330 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.67 2.56 -69.09 -0.18 6.50 16 3 H 0.05 1.40 7.58 -51.92 -0.39 1.01 16 4 C -0.54 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.71 -14.43 5.07 -54.93 -0.28 -14.71 16 13 C 0.50 9.52 7.79 -10.98 -0.09 9.43 16 14 O -0.56 -12.88 15.46 5.56 0.09 -12.79 16 15 C -0.14 -1.86 5.55 -27.88 -0.15 -2.02 16 16 C -0.13 -1.76 3.35 -89.54 -0.30 -2.06 16 17 C 0.04 0.57 8.79 37.64 0.33 0.90 16 18 O -0.39 -5.46 12.46 -35.23 -0.44 -5.90 16 19 C 0.04 0.39 8.79 37.64 0.33 0.72 16 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 23 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.00 7.88 -51.93 -0.41 0.60 16 27 H 0.11 1.64 7.74 -51.93 -0.40 1.24 16 28 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 29 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 265.86 15.07 4.01 4.01 Total: -1.00 -30.91 265.86 -5.48 -36.38 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.35 Total: 4.35 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.11 Total: -2.56 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.35 Total: -38.96 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.35 Total: -18.69 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.91 -5.48 -36.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388772915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.193 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds