Wall clock time and date at job start Sun Mar 29 2020 21:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.54029 * 113.81509 * 273.49964 * 16 15 13 18 18 O 1.44437 * 85.43090 * 223.24114 * 17 16 15 19 19 C 1.44183 * 93.37931 * 24.09098 * 18 17 16 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 25 25 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 26 26 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 27 27 H 1.08997 * 113.00369 * 45.33271 * 16 15 13 28 28 H 1.08994 * 113.86769 * 337.35066 * 17 16 15 29 29 H 1.09007 * 113.86538 * 109.05364 * 17 16 15 30 30 H 1.08996 * 113.86508 * 221.76841 * 19 18 17 31 31 H 1.08991 * 113.98094 * 90.07329 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 4.0125 1.0576 4.8407 18 8 3.9517 0.7918 6.2591 19 6 3.1372 -0.3859 6.0900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 2.2490 -1.6316 1.1527 25 1 1.9776 -1.5506 3.8326 26 1 3.6492 -1.1202 3.3980 27 1 1.8033 0.8683 4.8391 28 1 4.8538 0.5802 4.3383 29 1 3.9018 2.1109 4.5829 30 1 2.3337 -0.4750 6.8210 31 1 3.7087 -1.3062 5.9699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388772915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:13 Heat of formation + Delta-G solvation = -85.520002 kcal Electronic energy + Delta-G solvation = -14176.396240 eV Core-core repulsion = 11650.823132 eV Total energy + Delta-G solvation = -2525.573108 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.46017 -40.13058 -36.70402 -34.31384 -33.25009 -30.82974 -27.46118 -27.39815 -27.20365 -23.12163 -21.27966 -20.84381 -18.95527 -17.62146 -17.26910 -17.18360 -16.59619 -16.40542 -15.88596 -15.61983 -14.68655 -14.34875 -13.94198 -13.60346 -13.42070 -13.00208 -12.85461 -12.76153 -12.57886 -12.26439 -12.15916 -11.84836 -11.50527 -11.11181 -10.67563 -10.60430 -10.53008 -9.71291 -8.17180 -6.35068 1.45569 1.47569 1.55469 1.88826 2.36539 2.64939 2.79521 3.13178 3.39875 3.84758 4.03964 4.27681 4.44796 4.52159 4.66634 4.68452 4.78027 4.80670 4.92256 5.08824 5.11620 5.21125 5.29913 5.44881 5.62902 5.70667 5.92401 6.11064 6.73697 7.01974 7.33518 7.62441 8.88899 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064173 B = 0.006058 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.214356 B = 4621.027998 C = 4745.851161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.288 1.288 10 H -0.270 1.270 11 H -0.263 1.263 12 N -0.708 5.708 13 C 0.492 3.508 14 O -0.604 6.604 15 C -0.125 4.125 16 C -0.140 4.140 17 C 0.037 3.963 18 O -0.412 6.412 19 C 0.048 3.952 20 H 0.041 0.959 21 H 0.011 0.989 22 H 0.064 0.936 23 H 0.265 0.735 24 H 0.406 0.594 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -7.841 11.518 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.213 1.213 10 H -0.195 1.195 11 H -0.188 1.188 12 N -0.357 5.357 13 C 0.280 3.720 14 O -0.486 6.486 15 C -0.165 4.165 16 C -0.159 4.159 17 C -0.040 4.040 18 O -0.331 6.331 19 C -0.028 4.028 20 H 0.060 0.940 21 H 0.030 0.970 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.242 0.758 25 H 0.145 0.855 26 H 0.139 0.861 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.086 -6.773 11.630 14.065 hybrid contribution -0.023 -0.204 -1.262 1.278 sum 4.063 -6.977 10.368 13.141 Atomic orbital electron populations 1.21893 0.98487 0.99422 0.99422 1.18308 0.91027 0.91889 0.82328 0.98652 1.21544 1.32582 1.13593 0.90824 0.90712 1.25836 0.94875 0.95583 1.02452 1.70057 1.37037 1.24032 1.24644 0.85376 0.78638 0.78702 0.77483 1.21330 1.19537 1.18781 1.46314 1.65254 1.14301 1.09816 1.21531 0.77331 0.87206 0.85904 1.90637 1.53276 1.18705 1.86031 1.21788 1.05129 0.99365 0.90183 1.24062 0.99550 0.97285 0.95025 1.24135 0.97332 1.01377 0.81136 1.89662 1.74778 1.43947 1.24745 1.24239 0.93943 0.89768 0.94823 0.94010 0.97026 0.91723 0.92592 0.75843 0.85534 0.86080 0.89570 0.88483 0.90641 0.87677 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 2 C 0.27 13.81 2.56 44.24 0.11 13.92 16 3 H 0.00 -0.27 7.58 -2.38 -0.02 -0.29 16 4 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.59 16 8 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 9 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 12 N -0.71 -28.06 5.07 -446.09 -2.26 -30.32 16 13 C 0.49 18.36 7.79 87.66 0.68 19.05 16 14 O -0.60 -28.74 15.46 -3.04 -0.05 -28.79 16 15 C -0.13 -2.86 5.55 29.85 0.17 -2.69 16 16 C -0.14 -3.41 3.35 -10.09 -0.03 -3.45 16 17 C 0.04 0.95 8.79 72.29 0.64 1.58 16 18 O -0.41 -10.89 12.46 -148.98 -1.86 -12.74 16 19 C 0.05 0.88 8.79 72.30 0.64 1.52 16 20 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 22 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 23 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 24 H 0.41 13.07 8.54 -92.71 -0.79 12.28 16 25 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.12 2.12 7.88 -2.39 -0.02 2.10 16 27 H 0.09 2.54 7.74 -2.39 -0.02 2.52 16 28 H 0.10 2.13 7.92 -2.39 -0.02 2.11 16 29 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -69.11 265.86 1.97 -67.13 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.33 Total: 17.20 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 3.54 Total: -3.44 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.02 Total: -82.91 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.90 Total: -41.53 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -69.11 1.97 -67.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388772915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.386 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds