Wall clock time and date at job start Sun Mar 29 2020 22:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 O 1.42900 * 110.90716 * 297.58871 * 3 2 1 5 5 C 1.55142 * 110.99002 * 61.45914 * 3 2 1 6 6 C 1.54312 * 103.17714 * 153.82761 * 5 3 2 7 7 N 1.47443 * 107.23612 * 337.62814 * 6 5 3 8 8 C 1.46900 * 111.00227 * 236.74273 * 7 6 5 9 9 C 1.52992 * 109.47131 * 290.12352 * 8 7 6 10 10 C 1.50702 * 109.47371 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99951 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00341 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99839 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47117 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47048 * 119.99704 * 14 12 10 17 17 H 1.48499 * 109.46795 * 239.99390 * 14 12 10 18 18 C 1.47844 * 108.56494 * 359.01050 * 7 6 5 19 19 H 1.08999 * 109.47132 * 299.99722 * 1 2 3 20 20 H 1.09004 * 109.47442 * 59.99460 * 1 2 3 21 21 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46691 * 240.00331 * 2 1 3 23 23 H 1.08992 * 109.47134 * 120.00323 * 2 1 3 24 24 H 0.96696 * 113.99925 * 62.41301 * 4 3 2 25 25 H 1.09002 * 110.70816 * 35.35609 * 5 3 2 26 26 H 1.09005 * 110.70106 * 272.29750 * 5 3 2 27 27 H 1.08997 * 109.89327 * 97.03090 * 6 5 3 28 28 H 1.09003 * 109.89220 * 218.21893 * 6 5 3 29 29 H 1.08998 * 109.46669 * 50.12444 * 8 7 6 30 30 H 1.08999 * 109.47032 * 170.11876 * 8 7 6 31 31 H 1.08998 * 109.47419 * 299.99632 * 9 8 7 32 32 H 1.08999 * 109.47551 * 59.99842 * 9 8 7 33 33 H 0.97000 * 119.99796 * 179.97438 * 13 12 10 34 34 H 1.08999 * 110.37744 * 142.93014 * 18 7 6 35 35 H 1.09008 * 110.37208 * 265.26666 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6270 2.1294 -1.1831 5 6 1.5727 2.1971 1.2725 6 6 2.6528 3.2843 1.4533 7 7 3.8615 2.8209 0.7475 8 6 5.0137 2.7658 1.6570 9 6 5.4357 4.1878 2.0322 10 6 6.6174 4.1314 2.9658 11 1 7.0267 3.1767 3.2616 12 6 7.1759 5.2984 3.4423 13 7 6.6778 6.4609 3.0817 14 14 8.6411 5.2284 4.5989 15 1 9.0080 3.8111 4.8477 16 1 9.7917 5.9374 3.9838 17 1 8.2878 5.8810 5.8852 18 6 3.5845 1.4917 0.1623 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 0.6680 2.2119 -1.2755 25 1 1.5523 1.5273 2.1321 26 1 0.5934 2.6492 1.1146 27 1 2.3089 4.2242 1.0216 28 1 2.8705 3.4181 2.5129 29 1 4.7389 2.2186 2.5587 30 1 5.8427 2.2592 1.1630 31 1 5.7105 4.7351 1.1305 32 1 4.6067 4.6945 2.5262 33 1 7.0705 7.2819 3.4172 34 1 4.0709 1.3955 -0.8083 35 1 3.9203 0.7031 0.8358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388791311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:20 Heat of formation + Delta-G solvation = -61.777611 kcal Electronic energy + Delta-G solvation = -14609.197161 eV Core-core repulsion = 12220.486695 eV Total energy + Delta-G solvation = -2388.710466 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49995 -36.08707 -33.30566 -32.76029 -30.75166 -28.93259 -27.54941 -24.33005 -23.08004 -21.56533 -20.21670 -19.43115 -16.73867 -16.37726 -15.67693 -15.09743 -14.53655 -14.40929 -13.68613 -13.48934 -13.11854 -12.60958 -12.49392 -12.13462 -12.01741 -11.84595 -11.42653 -11.12192 -11.03727 -10.99715 -10.68934 -10.54635 -10.32168 -9.83288 -9.75390 -9.32170 -9.06111 -8.30992 -7.61822 -5.95939 -3.98469 3.33169 3.40356 3.44373 4.17349 4.40059 4.54323 4.60141 4.81144 4.94429 5.05817 5.26689 5.34483 5.39932 5.56492 5.67656 5.74256 5.85031 5.87153 6.00250 6.09618 6.10587 6.25409 6.27176 6.47003 6.56715 7.02455 7.56908 7.57481 7.74801 7.83501 7.94733 8.14627 8.47610 9.09388 9.65013 11.15539 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.071687 B = 0.005712 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.493868 B = 4900.850792 C = 4996.005506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.121 3.879 4 O -0.540 6.540 5 C -0.166 4.166 6 C 0.051 3.949 7 N -0.524 5.524 8 C 0.057 3.943 9 C 0.029 3.971 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.057 3.943 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.368 0.632 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 -11.523 -4.696 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.080 3.920 4 O -0.345 6.345 5 C -0.205 4.205 6 C -0.077 4.077 7 N -0.248 5.248 8 C -0.070 4.070 9 C -0.009 4.009 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.071 4.071 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.215 0.785 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.469 -10.943 -5.149 16.667 hybrid contribution 0.025 -0.537 1.474 1.569 sum -11.444 -11.480 -3.675 16.621 Atomic orbital electron populations 1.21791 0.95614 1.01957 1.01875 1.22049 0.96384 0.96711 1.02914 1.22396 0.95142 0.89825 0.84657 1.86620 1.26793 1.79091 1.42031 1.23488 0.99899 0.98962 0.98105 1.22722 0.89106 0.97682 0.98213 1.63629 1.04568 1.22683 1.33964 1.22535 0.90816 1.01615 0.92038 1.19070 0.95791 0.89485 0.96530 1.21247 1.14531 0.92398 1.27860 0.92787 1.24998 0.97215 0.95503 0.96614 1.69992 1.41271 0.97235 1.44716 0.86547 0.82763 0.78034 0.80710 1.19796 1.20969 1.21066 1.23088 0.92077 0.91602 1.00324 0.92381 0.92641 0.92486 0.91077 0.91031 0.78526 0.91023 0.90922 0.90878 0.92205 0.96178 0.92211 0.95691 0.96594 0.93077 0.90066 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.47 37.16 0.35 -0.90 16 2 C -0.14 -1.45 5.28 -26.73 -0.14 -1.59 16 3 C 0.12 1.59 0.99 -88.22 -0.09 1.50 16 4 O -0.54 -7.40 13.14 -35.23 -0.46 -7.86 16 5 C -0.17 -2.20 5.07 -24.91 -0.13 -2.32 16 6 C 0.05 0.90 6.21 -2.84 -0.02 0.88 16 7 N -0.52 -10.33 5.16 -230.94 -1.19 -11.52 16 8 C 0.06 1.26 4.47 -3.83 -0.02 1.25 16 9 C 0.03 0.78 5.00 -27.89 -0.14 0.64 16 10 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 14 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C 0.06 0.92 5.91 -2.04 -0.01 0.91 16 19 H 0.06 0.46 7.31 -51.93 -0.38 0.08 16 20 H 0.05 0.40 6.99 -51.93 -0.36 0.04 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 24 H 0.37 3.51 7.70 45.56 0.35 3.86 16 25 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 26 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.13 6.91 -51.93 -0.36 0.77 16 29 H 0.02 0.43 7.96 -51.93 -0.41 0.02 16 30 H 0.06 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.45 7.14 -51.93 -0.37 0.08 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.05 0.79 7.69 -51.92 -0.40 0.39 16 LS Contribution 280.21 15.07 4.22 4.22 Total: -1.00 -32.05 280.21 -7.58 -39.63 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.27 Total: -1.21 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.60 Total: -13.50 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.45 Total: -38.23 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.46 Total: -7.86 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.05 -7.58 -39.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388791311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.144 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds