Wall clock time and date at job start Sun Mar 29 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 O 1.42900 * 110.90716 * 297.58871 * 3 2 1 5 5 C 1.55142 * 110.99002 * 61.45914 * 3 2 1 6 6 C 1.54312 * 103.17714 * 153.82761 * 5 3 2 7 7 N 1.47443 * 107.23612 * 337.62814 * 6 5 3 8 8 C 1.46900 * 111.00227 * 236.74273 * 7 6 5 9 9 C 1.52992 * 109.47131 * 290.12352 * 8 7 6 10 10 C 1.50702 * 109.47371 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99951 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00341 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99839 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47117 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47048 * 119.99704 * 14 12 10 17 17 H 1.48499 * 109.46795 * 239.99390 * 14 12 10 18 18 C 1.47844 * 108.56494 * 359.01050 * 7 6 5 19 19 H 1.08999 * 109.47132 * 299.99722 * 1 2 3 20 20 H 1.09004 * 109.47442 * 59.99460 * 1 2 3 21 21 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46691 * 240.00331 * 2 1 3 23 23 H 1.08992 * 109.47134 * 120.00323 * 2 1 3 24 24 H 0.96696 * 113.99925 * 62.41301 * 4 3 2 25 25 H 1.09002 * 110.70816 * 35.35609 * 5 3 2 26 26 H 1.09005 * 110.70106 * 272.29750 * 5 3 2 27 27 H 1.08997 * 109.89327 * 97.03090 * 6 5 3 28 28 H 1.09003 * 109.89220 * 218.21893 * 6 5 3 29 29 H 1.08998 * 109.46669 * 50.12444 * 8 7 6 30 30 H 1.08999 * 109.47032 * 170.11876 * 8 7 6 31 31 H 1.08998 * 109.47419 * 299.99632 * 9 8 7 32 32 H 1.08999 * 109.47551 * 59.99842 * 9 8 7 33 33 H 0.97000 * 119.99796 * 179.97438 * 13 12 10 34 34 H 1.08999 * 110.37744 * 142.93014 * 18 7 6 35 35 H 1.09008 * 110.37208 * 265.26666 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6270 2.1294 -1.1831 5 6 1.5727 2.1971 1.2725 6 6 2.6528 3.2843 1.4533 7 7 3.8615 2.8209 0.7475 8 6 5.0137 2.7658 1.6570 9 6 5.4357 4.1878 2.0322 10 6 6.6174 4.1314 2.9658 11 1 7.0267 3.1767 3.2616 12 6 7.1759 5.2984 3.4423 13 7 6.6778 6.4609 3.0817 14 14 8.6411 5.2284 4.5989 15 1 9.0080 3.8111 4.8477 16 1 9.7917 5.9374 3.9838 17 1 8.2878 5.8810 5.8852 18 6 3.5845 1.4917 0.1623 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 0.6680 2.2119 -1.2755 25 1 1.5523 1.5273 2.1321 26 1 0.5934 2.6492 1.1146 27 1 2.3089 4.2242 1.0216 28 1 2.8705 3.4181 2.5129 29 1 4.7389 2.2186 2.5587 30 1 5.8427 2.2592 1.1630 31 1 5.7105 4.7351 1.1305 32 1 4.6067 4.6945 2.5262 33 1 7.0705 7.2819 3.4172 34 1 4.0709 1.3955 -0.8083 35 1 3.9203 0.7031 0.8358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388791311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:19 Heat of formation + Delta-G solvation = -85.933569 kcal Electronic energy + Delta-G solvation = -14610.244642 eV Core-core repulsion = 12220.486695 eV Total energy + Delta-G solvation = -2389.757947 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70664 -37.44934 -35.26113 -33.85612 -32.38477 -30.38044 -28.96991 -26.20864 -24.05692 -23.29833 -21.51331 -20.83263 -18.57864 -17.81975 -16.81408 -16.57109 -16.47163 -15.49904 -15.02046 -14.82442 -14.62005 -14.14567 -13.71352 -13.64030 -13.23031 -13.09157 -12.87441 -12.72903 -12.56181 -12.37982 -12.19651 -11.88023 -11.67594 -11.57855 -11.34671 -11.13797 -10.74565 -10.57543 -9.15438 -8.21184 -6.33599 1.39458 1.40604 1.53972 2.39615 3.05875 3.12035 3.25254 3.58628 3.69157 3.88370 4.24022 4.27412 4.39552 4.48139 4.51328 4.62696 4.70671 4.81158 4.86999 4.89189 4.97415 5.05008 5.11869 5.17772 5.27783 5.42793 5.43640 5.62725 5.76945 6.08268 6.21228 6.32335 6.83820 6.92731 7.35975 8.91577 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.071687 B = 0.005712 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.493868 B = 4900.850792 C = 4996.005506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.130 3.870 4 O -0.561 6.561 5 C -0.153 4.153 6 C 0.046 3.954 7 N -0.548 5.548 8 C 0.075 3.925 9 C 0.038 3.962 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.970 3.030 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.276 1.276 18 C 0.049 3.951 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.387 0.613 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.026 0.974 30 H 0.060 0.940 31 H -0.013 1.013 32 H -0.009 1.009 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 -13.301 -4.195 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.088 3.912 4 O -0.369 6.369 5 C -0.191 4.191 6 C -0.082 4.082 7 N -0.272 5.272 8 C -0.052 4.052 9 C 0.000 4.000 10 C -0.584 4.584 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.794 3.206 15 H -0.184 1.184 16 H -0.203 1.203 17 H -0.202 1.202 18 C -0.078 4.078 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.237 0.763 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.005 0.995 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.084 -12.739 -4.660 18.167 hybrid contribution 0.177 0.070 1.253 1.267 sum -11.907 -12.669 -3.407 17.718 Atomic orbital electron populations 1.21789 0.93748 1.02992 1.02484 1.21983 0.97915 0.94114 1.03289 1.22313 0.92840 0.91709 0.84317 1.86571 1.28768 1.79425 1.42164 1.23436 0.99216 0.97626 0.98849 1.22710 0.90033 0.98899 0.96583 1.63469 1.04661 1.25461 1.33644 1.22148 0.92125 0.98098 0.92874 1.18895 0.94721 0.92003 0.94378 1.21658 1.15286 0.93008 1.28415 0.92007 1.26017 1.00507 0.94901 0.98352 1.70135 1.43029 0.98152 1.46034 0.85325 0.78383 0.78722 0.78145 1.18404 1.20314 1.20194 1.23195 0.94889 0.89933 0.99791 0.92043 0.91801 0.91293 0.90927 0.90505 0.76346 0.89582 0.88536 0.92419 0.94131 0.95556 0.92125 0.99468 0.99083 0.92713 0.90856 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.47 71.98 0.68 -1.24 16 2 C -0.13 -2.33 5.28 30.60 0.16 -2.17 16 3 C 0.13 3.14 0.99 -9.24 -0.01 3.13 16 4 O -0.56 -14.33 13.14 -148.98 -1.96 -16.29 16 5 C -0.15 -3.75 5.07 31.77 0.16 -3.59 16 6 C 0.05 1.63 6.21 86.64 0.54 2.17 16 7 N -0.55 -21.91 5.16 -884.57 -4.56 -26.48 16 8 C 0.08 3.40 4.47 86.30 0.39 3.79 16 9 C 0.04 2.12 5.00 29.85 0.15 2.27 16 10 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 11 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.93 -58.73 13.29 21.45 0.28 -58.44 16 14 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 C 0.05 1.55 5.91 86.94 0.51 2.06 16 19 H 0.06 0.75 7.31 -2.39 -0.02 0.73 16 20 H 0.06 0.70 6.99 -2.38 -0.02 0.68 16 21 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.08 1.27 8.11 -2.39 -0.02 1.25 16 24 H 0.39 6.39 7.70 -74.06 -0.57 5.82 16 25 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 26 H 0.10 1.92 8.10 -2.38 -0.02 1.90 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.04 1.58 6.91 -2.39 -0.02 1.56 16 29 H 0.03 1.14 7.96 -2.39 -0.02 1.13 16 30 H 0.06 2.69 8.07 -2.39 -0.02 2.67 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H -0.01 -0.56 7.14 -2.39 -0.02 -0.57 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 1.88 7.69 -2.38 -0.02 1.87 16 Total: -1.00 -70.35 280.21 -0.45 -70.80 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.48 Total: 8.37 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 3.28 Total: -25.11 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -4.28 Total: -84.92 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.96 Total: -16.29 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.35 -0.45 -70.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388791311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.131 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds