Wall clock time and date at job start Sun Mar 29 2020 22:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.82341 * 2 1 4 4 C 1.54382 * 109.83335 * 120.89192 * 2 1 3 5 5 C 1.55299 * 102.25335 * 140.87232 * 4 2 1 6 6 H 1.08998 * 111.13062 * 83.78287 * 5 4 2 7 7 N 1.46901 * 111.12204 * 207.90551 * 5 4 2 8 8 C 1.46904 * 110.99873 * 204.99562 * 7 5 4 9 9 C 1.53006 * 109.46976 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46941 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00021 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99773 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99808 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47073 * 59.99872 * 14 12 10 16 16 H 1.48499 * 109.47052 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47105 * 299.99918 * 14 12 10 18 18 C 1.54944 * 100.94354 * 325.86335 * 5 4 2 19 19 O 1.43236 * 109.83198 * 239.02603 * 2 1 3 20 20 H 1.09002 * 109.47153 * 299.10872 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.11063 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.11044 * 1 2 3 23 23 H 1.09000 * 109.46883 * 60.70442 * 3 2 1 24 24 H 1.09003 * 109.47034 * 180.69641 * 3 2 1 25 25 H 1.08998 * 109.47643 * 300.70607 * 3 2 1 26 26 H 1.09001 * 110.84566 * 259.06095 * 4 2 1 27 27 H 1.08994 * 110.84657 * 22.47088 * 4 2 1 28 28 H 1.00902 * 111.00184 * 81.04684 * 7 5 4 29 29 H 1.08996 * 109.47630 * 299.99914 * 8 7 5 30 30 H 1.09003 * 109.46808 * 60.00271 * 8 7 5 31 31 H 1.09007 * 109.46942 * 299.99928 * 9 8 7 32 32 H 1.08991 * 109.46971 * 60.00107 * 9 8 7 33 33 H 0.97002 * 120.00320 * 179.97438 * 13 12 10 34 34 H 1.09000 * 110.31270 * 155.35941 * 18 5 4 35 35 H 1.08998 * 110.31378 * 277.53480 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7456 1.2462 5 6 3.2730 -1.5215 0.6778 6 1 4.1621 -0.8915 0.6512 7 7 3.5219 -2.7506 1.4431 8 6 4.9279 -3.1624 1.3349 9 6 5.1476 -4.4433 2.1425 10 6 6.5901 -4.8654 2.0321 11 1 7.2809 -4.2791 1.4443 12 6 7.0277 -6.0008 2.6806 13 7 6.1864 -6.7150 3.3959 14 14 8.8155 -6.5245 2.5431 15 1 9.6889 -5.4480 3.0755 16 1 9.0288 -7.7675 3.3271 17 1 9.1500 -6.7739 1.1179 18 6 2.7747 -1.8450 -0.7532 19 8 2.0159 -0.6934 -1.1553 20 1 -0.3633 0.4999 0.8979 21 1 -0.3633 -1.0276 -0.0160 22 1 -0.3634 0.5276 -0.8819 23 1 1.6990 1.9517 0.8962 24 1 3.1388 1.4327 -0.0125 25 1 1.6784 1.9592 -0.8835 26 1 2.3672 -0.0410 2.0166 27 1 1.2999 -1.4310 1.6335 28 1 2.9043 -3.4918 1.1477 29 1 5.1732 -3.3463 0.2890 30 1 5.5690 -2.3719 1.7250 31 1 4.9022 -4.2598 3.1887 32 1 4.5065 -5.2334 1.7521 33 1 6.4941 -7.5139 3.8518 34 1 3.6210 -1.9934 -1.4240 35 1 2.1401 -2.7311 -0.7417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396610021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:22 Heat of formation + Delta-G solvation = -65.587065 kcal Electronic energy + Delta-G solvation = -14331.705958 eV Core-core repulsion = 11942.830302 eV Total energy + Delta-G solvation = -2388.875656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.89210 -35.77587 -33.18067 -33.04389 -30.72040 -27.80974 -27.42219 -25.65745 -23.96988 -21.03378 -20.59591 -20.04551 -16.51287 -16.16968 -15.73859 -15.13887 -14.49234 -14.25374 -13.76417 -13.55377 -13.39533 -12.81234 -12.68472 -12.31956 -12.13486 -11.73675 -11.61158 -11.46477 -11.09939 -10.94151 -10.81131 -10.66249 -10.47436 -10.04695 -9.53656 -9.39056 -9.18590 -8.37137 -7.88474 -6.01359 -4.04327 3.32710 3.37139 3.39400 3.72791 4.41842 4.61077 4.63825 4.83745 4.95542 5.11395 5.18376 5.28358 5.34660 5.50853 5.61698 5.63766 5.76789 5.79265 5.83884 6.03101 6.06083 6.09103 6.26080 6.28900 6.36042 6.91977 7.08993 7.41207 7.68058 7.76388 7.88553 8.04468 8.40510 9.02514 9.59637 11.10036 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.073598 B = 0.005038 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.355432 B = 5556.312202 C = 5654.199007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 C -0.151 4.151 4 C -0.135 4.135 5 C 0.057 3.943 6 H 0.089 0.911 7 N -0.676 5.676 8 C 0.064 3.936 9 C 0.025 3.975 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.023 3.977 19 O -0.376 6.376 20 H 0.065 0.935 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.339 0.661 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.014 0.986 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 12.564 -5.944 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.057 3.943 3 C -0.208 4.208 4 C -0.173 4.173 5 C -0.055 4.055 6 H 0.108 0.892 7 N -0.307 5.307 8 C -0.064 4.064 9 C -0.013 4.013 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.056 4.056 19 O -0.295 6.295 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.158 0.842 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.243 12.796 -5.436 16.695 hybrid contribution 1.067 -0.831 -0.770 1.557 sum -8.176 11.964 -6.207 15.765 Atomic orbital electron populations 1.22088 0.94404 1.02444 1.02025 1.22109 0.93866 0.92677 0.85671 1.22065 1.01746 0.95019 1.02013 1.23163 0.98000 0.99317 0.96845 1.23254 0.98077 0.94032 0.90128 0.89245 1.60574 1.07650 1.05527 1.56973 1.22242 0.85712 1.00082 0.98323 1.19073 0.96413 0.90025 0.95748 1.21128 0.94938 1.09440 1.30731 0.92789 1.24995 0.97593 0.96484 0.95205 1.69957 1.34634 1.16576 1.32067 0.86640 0.85209 0.77937 0.78098 1.20207 1.21240 1.20271 1.24170 0.95013 0.88898 0.97483 1.88397 1.70813 1.40200 1.30062 0.91590 0.92207 0.92242 0.91574 0.92117 0.92230 0.89964 0.90037 0.84229 0.96441 0.92197 0.95603 0.96764 0.92896 0.89992 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.74 37.16 0.32 -1.23 16 2 C 0.10 1.14 1.27 -89.90 -0.11 1.03 16 3 C -0.15 -1.56 8.73 37.16 0.32 -1.23 16 4 C -0.13 -1.70 5.79 -24.79 -0.14 -1.84 16 5 C 0.06 0.83 3.44 -65.47 -0.23 0.60 16 6 H 0.09 1.34 7.83 -51.93 -0.41 0.93 16 7 N -0.68 -11.82 6.43 -104.36 -0.67 -12.49 16 8 C 0.06 1.33 5.49 -3.82 -0.02 1.31 16 9 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.02 0.32 7.39 38.18 0.28 0.60 16 19 O -0.38 -5.36 10.68 -35.23 -0.38 -5.74 16 20 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 27 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 28 H 0.34 5.72 8.18 -39.29 -0.32 5.39 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 31 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.82 7.74 -51.93 -0.40 0.41 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -29.92 286.87 -7.27 -37.19 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.13 Total: 0.05 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.13 Total: -13.81 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.07 Total: -38.64 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.74 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.92 -7.27 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396610021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.395 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds