Wall clock time and date at job start Sun Mar 29 2020 22:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.82341 * 2 1 4 4 C 1.54382 * 109.83335 * 120.89192 * 2 1 3 5 5 C 1.55299 * 102.25335 * 140.87232 * 4 2 1 6 6 H 1.08998 * 111.13062 * 83.78287 * 5 4 2 7 7 N 1.46901 * 111.12204 * 207.90551 * 5 4 2 8 8 C 1.46904 * 110.99873 * 204.99562 * 7 5 4 9 9 C 1.53006 * 109.46976 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46941 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00021 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99773 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99808 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47073 * 59.99872 * 14 12 10 16 16 H 1.48499 * 109.47052 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47105 * 299.99918 * 14 12 10 18 18 C 1.54944 * 100.94354 * 325.86335 * 5 4 2 19 19 O 1.43236 * 109.83198 * 239.02603 * 2 1 3 20 20 H 1.09002 * 109.47153 * 299.10872 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.11063 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.11044 * 1 2 3 23 23 H 1.09000 * 109.46883 * 60.70442 * 3 2 1 24 24 H 1.09003 * 109.47034 * 180.69641 * 3 2 1 25 25 H 1.08998 * 109.47643 * 300.70607 * 3 2 1 26 26 H 1.09001 * 110.84566 * 259.06095 * 4 2 1 27 27 H 1.08994 * 110.84657 * 22.47088 * 4 2 1 28 28 H 1.00902 * 111.00184 * 81.04684 * 7 5 4 29 29 H 1.08996 * 109.47630 * 299.99914 * 8 7 5 30 30 H 1.09003 * 109.46808 * 60.00271 * 8 7 5 31 31 H 1.09007 * 109.46942 * 299.99928 * 9 8 7 32 32 H 1.08991 * 109.46971 * 60.00107 * 9 8 7 33 33 H 0.97002 * 120.00320 * 179.97438 * 13 12 10 34 34 H 1.09000 * 110.31270 * 155.35941 * 18 5 4 35 35 H 1.08998 * 110.31378 * 277.53480 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7456 1.2462 5 6 3.2730 -1.5215 0.6778 6 1 4.1621 -0.8915 0.6512 7 7 3.5219 -2.7506 1.4431 8 6 4.9279 -3.1624 1.3349 9 6 5.1476 -4.4433 2.1425 10 6 6.5901 -4.8654 2.0321 11 1 7.2809 -4.2791 1.4443 12 6 7.0277 -6.0008 2.6806 13 7 6.1864 -6.7150 3.3959 14 14 8.8155 -6.5245 2.5431 15 1 9.6889 -5.4480 3.0755 16 1 9.0288 -7.7675 3.3271 17 1 9.1500 -6.7739 1.1179 18 6 2.7747 -1.8450 -0.7532 19 8 2.0159 -0.6934 -1.1553 20 1 -0.3633 0.4999 0.8979 21 1 -0.3633 -1.0276 -0.0160 22 1 -0.3634 0.5276 -0.8819 23 1 1.6990 1.9517 0.8962 24 1 3.1388 1.4327 -0.0125 25 1 1.6784 1.9592 -0.8835 26 1 2.3672 -0.0410 2.0166 27 1 1.2999 -1.4310 1.6335 28 1 2.9043 -3.4918 1.1477 29 1 5.1732 -3.3463 0.2890 30 1 5.5690 -2.3719 1.7250 31 1 4.9022 -4.2598 3.1887 32 1 4.5065 -5.2334 1.7521 33 1 6.4941 -7.5139 3.8518 34 1 3.6210 -1.9934 -1.4240 35 1 2.1401 -2.7311 -0.7417 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396610021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:22 Heat of formation + Delta-G solvation = -85.710290 kcal Electronic energy + Delta-G solvation = -14332.578567 eV Core-core repulsion = 11942.830302 eV Total energy + Delta-G solvation = -2389.748265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95448 -37.28731 -35.06019 -34.12611 -32.37933 -29.44202 -28.22405 -26.70552 -25.90333 -22.56534 -22.14732 -21.00843 -18.53616 -17.39473 -16.96613 -16.49391 -16.28333 -15.60211 -15.08039 -14.76461 -14.45760 -14.18313 -14.09576 -13.72009 -13.18950 -13.09405 -12.91206 -12.75728 -12.61156 -12.44270 -12.40025 -11.99609 -11.73352 -11.68649 -11.38049 -11.16594 -10.57792 -10.54337 -9.32052 -8.20520 -6.32151 1.40957 1.43924 1.51907 2.40248 2.67651 3.13188 3.37378 3.57824 3.79599 3.96347 4.07310 4.15791 4.26536 4.48862 4.57702 4.64411 4.69858 4.77005 4.82967 4.89854 4.98736 5.03048 5.04703 5.07895 5.27681 5.40386 5.44167 5.65962 5.77017 6.05727 6.13411 6.23295 6.45156 6.84760 7.37304 8.91426 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.073598 B = 0.005038 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.355432 B = 5556.312202 C = 5654.199007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.091 3.909 3 C -0.150 4.150 4 C -0.129 4.129 5 C 0.055 3.945 6 H 0.088 0.912 7 N -0.679 5.679 8 C 0.083 3.917 9 C 0.031 3.969 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.027 3.973 19 O -0.390 6.390 20 H 0.084 0.916 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.342 0.658 29 H 0.022 0.978 30 H 0.059 0.941 31 H -0.005 1.005 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 13.628 -6.419 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.052 3.948 3 C -0.207 4.207 4 C -0.167 4.167 5 C -0.056 4.056 6 H 0.106 0.894 7 N -0.310 5.310 8 C -0.045 4.045 9 C -0.007 4.007 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.790 3.210 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.052 4.052 19 O -0.310 6.310 20 H 0.103 0.897 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.014 0.986 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.968 13.883 -5.923 17.557 hybrid contribution 0.910 -1.135 -0.616 1.580 sum -8.058 12.747 -6.539 16.437 Atomic orbital electron populations 1.22087 0.93015 1.02443 1.03209 1.22329 0.94988 0.93134 0.84389 1.22075 1.01301 0.94079 1.03242 1.23146 0.96875 0.99249 0.97459 1.23286 0.99031 0.92692 0.90594 0.89432 1.60488 1.05784 1.06614 1.58154 1.21850 0.87829 0.97460 0.97408 1.18928 0.95230 0.91899 0.94617 1.21584 0.96168 1.09881 1.30876 0.92114 1.25957 1.02530 0.96478 0.94630 1.70094 1.36995 1.17099 1.32945 0.85486 0.79234 0.77668 0.78564 1.19165 1.20805 1.19157 1.24074 0.95083 0.89134 0.96863 1.88387 1.70925 1.40292 1.31348 0.89705 0.92807 0.91810 0.89619 0.92831 0.91794 0.89018 0.90101 0.83915 0.95973 0.92208 0.98624 0.98904 0.92715 0.90080 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.74 71.98 0.63 -2.10 16 2 C 0.09 1.98 1.27 -10.32 -0.01 1.96 16 3 C -0.15 -2.74 8.73 71.98 0.63 -2.11 16 4 C -0.13 -3.03 5.79 31.85 0.18 -2.84 16 5 C 0.05 1.55 3.44 46.37 0.16 1.71 16 6 H 0.09 2.52 7.83 -2.39 -0.02 2.50 16 7 N -0.68 -23.50 6.43 -484.07 -3.11 -26.61 16 8 C 0.08 3.45 5.49 86.30 0.47 3.92 16 9 C 0.03 1.63 5.23 29.85 0.16 1.79 16 10 C -0.55 -31.14 9.11 25.60 0.23 -30.91 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 12 C 0.00 0.13 5.46 84.66 0.46 0.59 16 13 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 14 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.03 0.73 7.39 72.65 0.54 1.27 16 19 O -0.39 -10.59 10.68 -148.98 -1.59 -12.18 16 20 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.98 7.82 -2.39 -0.02 1.96 16 27 H 0.08 1.91 7.85 -2.39 -0.02 1.90 16 28 H 0.34 11.51 8.18 -89.69 -0.73 10.78 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 2.47 8.09 -2.39 -0.02 2.45 16 31 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.63 7.74 -2.39 -0.02 1.61 16 Total: -1.00 -63.38 286.87 1.37 -62.01 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.31 Total: 13.92 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.45 Total: -26.73 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.83 Total: -83.16 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.59 Total: -12.18 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -63.38 1.37 -62.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396610021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.696 kcal (2) G-P(sol) polarization free energy of solvation -63.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds