Wall clock time and date at job start Sun Mar 29 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47241 * 240.00017 * 3 2 1 5 5 H 1.48505 * 109.46913 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47097 * 119.99740 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53006 * 109.47181 * 66.04184 * 15 14 13 17 17 C 1.52996 * 109.47274 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47050 * 180.02562 * 17 16 15 19 19 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 20 20 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 22 22 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 23 23 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 24 24 H 1.08993 * 109.50100 * 182.33643 * 12 11 9 25 25 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 26 26 H 1.08996 * 109.46322 * 299.16841 * 13 12 11 27 27 H 1.08996 * 109.47225 * 186.04271 * 15 14 13 28 28 H 1.09007 * 109.47465 * 306.04862 * 15 14 13 29 29 H 1.08996 * 109.47113 * 300.00157 * 16 15 14 30 30 H 1.09002 * 109.46981 * 59.99663 * 16 15 14 31 31 H 1.08996 * 109.47301 * 300.00192 * 17 16 15 32 32 H 1.09011 * 109.47108 * 60.00238 * 17 16 15 33 33 H 0.96704 * 113.99466 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.45905 * 181.76430 * 19 14 13 35 35 H 1.09002 * 109.46166 * 301.73872 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 3.4527 -6.0416 -1.0262 17 6 4.4075 -7.2288 -0.8863 18 8 5.3672 -7.1955 -1.9446 19 6 2.2440 -3.6654 -0.0047 20 1 -0.4851 0.8400 0.0004 21 1 0.9923 -2.4829 -2.1398 22 1 -0.3663 -1.7787 -1.2296 23 1 -0.9972 -4.0161 -0.4030 24 1 -0.9418 -4.0144 -2.1825 25 1 0.1855 -6.0218 -1.2438 26 1 1.3352 -4.9827 -2.1192 27 1 2.9405 -6.0184 1.0662 28 1 1.8588 -7.0066 0.0552 29 1 2.9377 -6.1000 -1.9850 30 1 4.0193 -5.1119 -0.9742 31 1 4.9224 -7.1699 0.0726 32 1 3.8411 -8.1587 -0.9380 33 1 6.0066 -7.9205 -1.9186 34 1 2.8629 -3.6192 0.8914 35 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397581380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:26 Heat of formation + Delta-G solvation = -65.839581 kcal Electronic energy + Delta-G solvation = -14794.674432 eV Core-core repulsion = 12405.787826 eV Total energy + Delta-G solvation = -2388.886606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.61879 -36.89020 -34.22063 -32.29482 -30.08775 -29.77373 -25.19287 -24.90835 -22.58186 -21.45587 -20.73694 -18.28766 -17.36924 -16.32620 -15.59358 -15.04369 -14.44800 -14.13249 -14.04866 -13.23543 -12.95854 -12.88057 -12.25919 -11.99125 -11.83075 -11.51142 -11.01408 -10.94289 -10.86594 -10.63543 -10.44944 -10.10777 -9.92471 -9.75225 -9.42483 -8.99615 -8.66986 -8.26531 -7.60679 -5.93697 -3.99816 3.34941 3.39325 3.42067 4.17900 4.44142 4.64825 4.99652 5.19427 5.36123 5.44600 5.48380 5.63378 5.73035 5.89150 5.89709 6.08181 6.15070 6.36357 6.39746 6.49570 6.56649 6.76666 6.81051 7.01821 7.26222 7.43728 7.54867 7.70018 7.78970 7.86466 8.12657 8.21633 8.52429 9.04078 9.64230 11.12294 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035433 B = 0.007679 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.036202 B = 3645.603338 C = 4175.265880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.059 3.941 16 C -0.162 4.162 17 C 0.081 3.919 18 O -0.576 6.576 19 C 0.064 3.936 20 H 0.260 0.740 21 H 0.029 0.971 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.375 0.625 34 H 0.058 0.942 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -12.574 -1.536 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.068 4.068 14 N -0.257 5.257 15 C -0.070 4.070 16 C -0.201 4.201 17 C 0.002 3.998 18 O -0.381 6.381 19 C -0.063 4.063 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.109 0.891 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.221 0.779 34 H 0.076 0.924 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.752 -11.897 -1.283 12.540 hybrid contribution 1.384 0.374 -0.583 1.547 sum 5.136 -11.523 -1.866 12.753 Atomic orbital electron populations 1.69881 1.05834 1.26393 1.50678 1.24928 0.94824 0.98913 0.95153 0.86693 0.79620 0.83317 0.78550 1.20390 1.21309 1.20317 1.21122 0.92797 0.90720 1.50718 0.92915 1.18691 0.92635 0.90322 0.94805 0.94854 1.21657 1.00039 0.94739 0.98496 1.21680 0.97210 0.96528 1.00161 1.22058 0.95537 0.98617 0.90615 1.62269 1.23225 1.02507 1.37712 1.22100 0.92768 0.95000 0.97105 1.22298 0.97836 0.98593 1.01378 1.22162 0.90104 0.98228 0.89281 1.86536 1.46084 1.53642 1.51823 1.22369 0.96535 0.88523 0.98885 0.93027 0.95189 0.89115 0.92133 0.93567 0.92541 0.95554 0.91024 0.91508 0.91332 0.90584 0.93720 0.93941 0.77929 0.92387 0.95772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 11.35 55.43 0.63 -25.07 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.38 8.57 -34.44 -0.30 -14.67 16 8 H 0.05 1.45 7.75 -52.49 -0.41 1.05 16 9 C 0.05 1.39 2.27 -91.62 -0.21 1.18 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.70 5.02 -26.61 -0.13 -2.83 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C 0.06 1.08 5.05 -3.83 -0.02 1.06 16 14 N -0.53 -10.06 4.86 -234.58 -1.14 -11.20 16 15 C 0.06 0.88 5.36 -3.82 -0.02 0.86 16 16 C -0.16 -2.38 4.89 -26.73 -0.13 -2.51 16 17 C 0.08 0.95 7.05 37.16 0.26 1.21 16 18 O -0.58 -7.17 13.66 -35.23 -0.48 -7.65 16 19 C 0.06 1.38 4.07 -3.77 -0.02 1.37 16 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 26 H 0.03 0.48 6.75 -51.93 -0.35 0.13 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.88 8.06 -51.92 -0.42 0.46 16 29 H 0.07 1.08 6.68 -51.93 -0.35 0.73 16 30 H 0.08 1.28 6.51 -51.93 -0.34 0.94 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.37 2.66 9.12 45.56 0.42 3.08 16 34 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 35 H 0.02 0.53 6.61 -51.93 -0.34 0.19 16 LS Contribution 273.50 15.07 4.12 4.12 Total: -1.00 -30.18 273.50 -7.75 -37.93 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.04 Total: 0.53 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.82 Total: -15.19 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.51 Total: -36.27 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.48 Total: -7.65 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.18 -7.75 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397581380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.913 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds