Wall clock time and date at job start Sun Mar 29 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47241 * 240.00017 * 3 2 1 5 5 H 1.48505 * 109.46913 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47097 * 119.99740 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53006 * 109.47181 * 66.04184 * 15 14 13 17 17 C 1.52996 * 109.47274 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47050 * 180.02562 * 17 16 15 19 19 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 20 20 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 22 22 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 23 23 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 24 24 H 1.08993 * 109.50100 * 182.33643 * 12 11 9 25 25 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 26 26 H 1.08996 * 109.46322 * 299.16841 * 13 12 11 27 27 H 1.08996 * 109.47225 * 186.04271 * 15 14 13 28 28 H 1.09007 * 109.47465 * 306.04862 * 15 14 13 29 29 H 1.08996 * 109.47113 * 300.00157 * 16 15 14 30 30 H 1.09002 * 109.46981 * 59.99663 * 16 15 14 31 31 H 1.08996 * 109.47301 * 300.00192 * 17 16 15 32 32 H 1.09011 * 109.47108 * 60.00238 * 17 16 15 33 33 H 0.96704 * 113.99466 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.45905 * 181.76430 * 19 14 13 35 35 H 1.09002 * 109.46166 * 301.73872 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 3.4527 -6.0416 -1.0262 17 6 4.4075 -7.2288 -0.8863 18 8 5.3672 -7.1955 -1.9446 19 6 2.2440 -3.6654 -0.0047 20 1 -0.4851 0.8400 0.0004 21 1 0.9923 -2.4829 -2.1398 22 1 -0.3663 -1.7787 -1.2296 23 1 -0.9972 -4.0161 -0.4030 24 1 -0.9418 -4.0144 -2.1825 25 1 0.1855 -6.0218 -1.2438 26 1 1.3352 -4.9827 -2.1192 27 1 2.9405 -6.0184 1.0662 28 1 1.8588 -7.0066 0.0552 29 1 2.9377 -6.1000 -1.9850 30 1 4.0193 -5.1119 -0.9742 31 1 4.9224 -7.1699 0.0726 32 1 3.8411 -8.1587 -0.9380 33 1 6.0066 -7.9205 -1.9186 34 1 2.8629 -3.6192 0.8914 35 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397581380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:26 Heat of formation + Delta-G solvation = -88.411607 kcal Electronic energy + Delta-G solvation = -14795.653228 eV Core-core repulsion = 12405.787826 eV Total energy + Delta-G solvation = -2389.865403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13722 -37.91036 -35.92420 -34.07222 -31.69653 -31.40670 -26.95986 -26.50495 -23.90069 -23.17648 -22.21748 -19.98284 -18.55049 -18.16360 -16.86882 -16.57113 -16.13713 -15.68321 -15.43519 -14.75025 -14.51786 -14.43779 -13.90252 -13.58013 -13.28033 -12.99839 -12.86913 -12.71363 -12.52270 -12.01439 -11.97080 -11.72758 -11.58114 -11.38195 -10.86902 -10.85009 -10.66643 -10.38091 -9.11167 -8.08422 -6.22856 1.40557 1.42082 1.49780 2.42355 3.13119 3.18156 3.38153 3.93685 4.17643 4.25822 4.28137 4.34602 4.45239 4.52939 4.64805 4.68000 4.76413 4.77199 4.91287 4.95328 5.08441 5.13706 5.18500 5.29747 5.40416 5.52258 5.62668 5.96176 6.11820 6.20421 6.37245 6.45630 6.89535 6.92737 7.44877 8.96124 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035433 B = 0.007679 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.036202 B = 3645.603338 C = 4175.265880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.105 4.105 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.546 5.546 15 C 0.062 3.938 16 C -0.158 4.158 17 C 0.084 3.916 18 O -0.601 6.601 19 C 0.081 3.919 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -14.188 -1.707 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.064 4.064 14 N -0.269 5.269 15 C -0.066 4.066 16 C -0.197 4.197 17 C 0.006 3.994 18 O -0.410 6.410 19 C -0.047 4.047 20 H 0.070 0.930 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 4.482 -13.543 -1.453 14.339 hybrid contribution 1.162 0.843 -0.527 1.529 sum 5.644 -12.700 -1.979 14.038 Atomic orbital electron populations 1.70024 1.07155 1.27174 1.51087 1.25720 0.95687 1.02316 0.94715 0.85681 0.78461 0.79138 0.78789 1.19833 1.20697 1.19574 1.21503 0.92929 0.92323 1.51037 0.93241 1.18631 0.93052 0.91399 0.93727 0.98486 1.21469 0.99097 0.96490 0.97274 1.21602 0.97607 0.94809 1.00973 1.22059 0.94908 0.99184 0.90252 1.62194 1.24078 1.02339 1.38289 1.22190 0.92600 0.94293 0.97550 1.22195 0.98114 0.98784 1.00608 1.22110 0.89948 0.97627 0.89695 1.86468 1.46967 1.55360 1.52200 1.21984 0.95311 0.89053 0.98304 0.93002 0.96252 0.92347 0.92919 0.91244 0.89024 0.95675 0.90222 0.88552 0.92435 0.93561 0.92357 0.91437 0.75285 0.92747 0.96582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 11.35 21.45 0.24 -54.07 16 2 C 0.01 0.82 5.30 84.66 0.45 1.27 16 3 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -30.96 8.57 25.60 0.22 -30.74 16 8 H 0.05 2.79 7.75 -2.91 -0.02 2.77 16 9 C 0.05 2.68 2.27 -11.44 -0.03 2.65 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C -0.10 -5.23 5.02 30.68 0.15 -5.07 16 12 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 13 C 0.06 2.17 5.05 86.33 0.44 2.60 16 14 N -0.55 -19.82 4.86 -896.07 -4.35 -24.18 16 15 C 0.06 1.67 5.36 86.31 0.46 2.14 16 16 C -0.16 -4.35 4.89 30.59 0.15 -4.20 16 17 C 0.08 1.73 7.05 71.98 0.51 2.23 16 18 O -0.60 -13.56 13.66 -148.98 -2.04 -15.60 16 19 C 0.08 3.56 4.07 86.37 0.35 3.91 16 20 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 21 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 22 H 0.06 3.26 6.15 -2.39 -0.01 3.25 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.09 2.53 8.06 -2.38 -0.02 2.52 16 26 H 0.03 0.87 6.75 -2.39 -0.02 0.86 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.10 8.06 -2.38 -0.02 2.09 16 29 H 0.06 1.70 6.68 -2.39 -0.02 1.68 16 30 H 0.05 1.54 6.51 -2.39 -0.02 1.52 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.40 4.58 9.12 -74.05 -0.68 3.90 16 34 H 0.05 2.37 8.12 -2.39 -0.02 2.35 16 35 H 0.02 0.72 6.61 -2.39 -0.02 0.71 16 Total: -1.00 -66.31 273.50 -0.85 -67.16 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.38 Total: 9.39 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 2.89 Total: -29.44 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -4.11 Total: -78.25 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -2.04 Total: -15.60 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.31 -0.85 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397581380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.253 kcal (2) G-P(sol) polarization free energy of solvation -66.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds