Wall clock time and date at job start Sun Mar 29 2020 22:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47343 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47291 * 30.00008 * 3 2 1 6 6 H 1.48501 * 109.47150 * 149.99664 * 3 2 1 7 7 C 1.37871 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00559 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 H 1.08994 * 110.46079 * 52.38704 * 14 13 12 16 16 C 1.54514 * 110.51229 * 175.00056 * 14 13 12 17 17 C 1.54478 * 104.06332 * 118.64151 * 16 14 13 18 18 O 1.44424 * 104.80518 * 23.97644 * 17 16 14 19 19 C 1.44428 * 105.27603 * 319.49097 * 18 17 16 20 20 H 0.96996 * 120.00288 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46949 * 60.00004 * 9 7 2 22 22 H 1.09005 * 109.47134 * 299.99983 * 9 7 2 23 23 H 1.00905 * 110.99607 * 303.95510 * 10 9 7 24 24 H 1.09002 * 109.47104 * 59.99767 * 11 10 9 25 25 H 1.08998 * 109.46828 * 300.00600 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 27 27 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 28 28 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 29 29 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 30 30 H 1.09000 * 110.50733 * 237.28365 * 16 14 13 31 31 H 1.09004 * 110.50745 * 359.97438 * 16 14 13 32 32 H 1.09001 * 110.37306 * 142.81193 * 17 16 14 33 33 H 1.09002 * 110.36723 * 265.03548 * 17 16 14 34 34 H 1.08997 * 110.36807 * 281.67741 * 19 18 17 35 35 H 1.09004 * 110.36892 * 159.34322 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0014 -2.5789 0.0022 11 6 5.4698 -2.6181 0.0034 12 6 5.9412 -4.0737 0.0039 13 6 7.4706 -4.1144 0.0058 14 6 7.9420 -5.5700 0.0057 15 1 7.4675 -6.1241 -0.8041 16 6 9.4805 -5.6409 -0.1185 17 6 9.9304 -6.3407 1.1831 18 8 8.7774 -7.0968 1.6130 19 6 7.6444 -6.2354 1.3677 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8912 22 1 3.8753 -0.6803 -0.8889 23 1 3.6255 -3.0947 0.7838 24 1 5.8460 -2.1137 0.8935 25 1 5.8474 -2.1146 -0.8864 26 1 5.5650 -4.5777 -0.8863 27 1 5.5635 -4.5775 0.8937 28 1 7.8486 -3.6104 -0.8837 29 1 7.8464 -3.6105 0.8962 30 1 9.7665 -6.2320 -0.9885 31 1 9.9052 -4.6389 -0.1803 32 1 10.7693 -7.0078 0.9848 33 1 10.2039 -5.6016 1.9362 34 1 7.5655 -5.4803 2.1498 35 1 6.7272 -6.8217 1.3113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402095456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:31 Heat of formation + Delta-G solvation = -67.349512 kcal Electronic energy + Delta-G solvation = -13879.970718 eV Core-core repulsion = 11491.018636 eV Total energy + Delta-G solvation = -2388.952082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67749 -36.34420 -34.28438 -32.45157 -30.95183 -29.13638 -27.02237 -24.41392 -22.95715 -21.13223 -21.03038 -20.32758 -16.80746 -16.60258 -15.89914 -15.76320 -15.14680 -14.55118 -14.22274 -13.64605 -13.36253 -12.98674 -12.78093 -12.59369 -12.13416 -11.81990 -11.66491 -11.23692 -11.11369 -10.97167 -10.75623 -10.62069 -10.40475 -10.23690 -9.97558 -9.78841 -9.28989 -8.59386 -7.47074 -6.06339 -4.04396 3.28233 3.35171 3.37615 3.78695 4.34308 4.41453 4.52525 4.67092 4.85502 5.03716 5.10189 5.16238 5.26475 5.31322 5.46062 5.52704 5.53408 5.64191 5.67299 5.81745 5.85095 5.92765 6.03735 6.10107 6.41448 6.47378 6.60055 6.77886 7.01975 7.60288 7.89815 8.33793 8.65102 9.01606 9.55578 11.06996 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.073626 B = 0.004400 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.211713 B = 6361.566514 C = 6555.882667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.683 5.683 11 C 0.056 3.944 12 C -0.118 4.118 13 C -0.109 4.109 14 C -0.121 4.121 15 H 0.085 0.915 16 C -0.153 4.153 17 C 0.044 3.956 18 O -0.380 6.380 19 C 0.048 3.952 20 H 0.264 0.736 21 H -0.017 1.017 22 H 0.021 0.979 23 H 0.335 0.665 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.273 -9.506 1.308 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.313 5.313 11 C -0.074 4.074 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.140 4.140 15 H 0.103 0.897 16 C -0.191 4.191 17 C -0.033 4.033 18 O -0.299 6.299 19 C -0.029 4.029 20 H 0.074 0.926 21 H 0.001 0.999 22 H 0.039 0.961 23 H 0.152 0.848 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.053 -9.655 0.713 21.372 hybrid contribution 0.550 1.514 0.759 1.781 sum 19.604 -8.141 1.473 21.278 Atomic orbital electron populations 1.69903 1.06155 1.26892 1.51006 1.24918 0.94769 0.98984 0.94727 0.86807 0.80215 0.83797 0.78592 1.20123 1.21172 1.19320 1.21078 0.88989 0.94835 1.50592 0.90294 1.19998 0.96636 0.85138 0.94688 1.60476 1.04646 1.16735 1.49423 1.21935 0.90579 0.95351 0.99552 1.21606 0.93913 0.97463 1.02570 1.21632 0.96431 0.94420 1.02232 1.22580 0.95289 0.97490 0.98618 0.89698 1.23032 0.95730 1.01640 0.98671 1.23395 0.89834 0.95246 0.94842 1.89113 1.15880 1.39526 1.85361 1.23580 0.90130 0.93650 0.95527 0.92637 0.99911 0.96068 0.84837 0.96545 0.91916 0.91062 0.92242 0.91512 0.91957 0.90770 0.90355 0.89397 0.92419 0.92009 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.05 9.87 -34.44 -0.34 -15.39 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.16 4.05 4.51 -4.98 -0.02 4.03 16 10 N -0.68 -14.32 6.49 -115.06 -0.75 -15.07 16 11 C 0.06 0.92 5.68 -3.83 -0.02 0.90 16 12 C -0.12 -1.52 5.35 -26.73 -0.14 -1.66 16 13 C -0.11 -1.13 4.43 -26.73 -0.12 -1.25 16 14 C -0.12 -1.16 3.11 -89.05 -0.28 -1.43 16 15 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 16 C -0.15 -1.26 6.74 -25.16 -0.17 -1.43 16 17 C 0.04 0.38 7.63 37.93 0.29 0.67 16 18 O -0.38 -4.44 11.65 -35.23 -0.41 -4.85 16 19 C 0.05 0.49 6.51 37.93 0.25 0.74 16 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 21 H -0.02 -0.42 7.20 -51.93 -0.37 -0.79 16 22 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 23 H 0.33 6.76 8.72 -39.29 -0.34 6.42 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.74 7.63 -51.93 -0.40 0.34 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.63 7.96 -51.93 -0.41 0.22 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.58 7.73 -51.93 -0.40 0.18 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.62 7.74 -51.93 -0.40 0.22 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 283.84 15.07 4.28 4.28 Total: -1.00 -31.40 283.84 -7.55 -38.95 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.12 Total: -0.33 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.65 Total: -12.92 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.03 Total: -42.24 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.41 Total: -4.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.40 -7.55 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402095456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.403 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds